Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3968g00016 ATGGCGAACCATGAAGAAGCAAAGCTCGAAACTTTCGTGCAGTGGCTACAGGCAAATGGGGTGGATCTTCGAGGTTGCAATATCAAGTACAGTGATTCCAGAAAAGGGTTTGGCATCTTTTCTGATAAAGATATTTCTGATGGGGTTCTGTTGGTTGTTCCACTAGATTTAGCAATAACTCCAATGAGGGTGTTGCAAGATCCTCTTCTAGGACCAGAATGTAGAGCATTGTTTGAAGAAGGAGATGTAGATGACAGGTTCTTAATGATGTTGTTACTGACTGTGGAGCGTTTGCGTAAGAATTCTCTATGGAAGCCGTACCTTGATATGCTTCCAACCACTTTTGGAAATCCACTTTGGTTTAGTGATGATGAACTTATAGAGCTAAGAGGAACGACATTATATCGTGCAACTGAATTGCAGAAGAAAAGCCTGCTGTCTTTGTATGAAACTAAAGCGAAGCATTTAGTGAAGAAACTTTTGACTCAGGATGGAGATTCAGAGATTGAGGTGTGCTTTGAAGATTTCCTTTGGGCGAATTCAGTATTTTGGAGCCGTGCTTTGAACATTCCATTGCCTCGTTCTTATGTATTTCCAAAAATGCAAGAAGGTGATGACAGTTGCATTCTAGAAGCTAATGAAAAAAGTGATGAGGTTAAAAAATCTGACAATCTAACCAAGGAAATGACATGTAACACAGTGCAAGGAGACACTGTTTGGGTAGAGGGTCTTGTCCCTGGCATTGACTTTTGCAACCATGATTTGAAGCCAATAGCAACATGGGAAGTTGACGGAACTGGTTTAACAACAGGAGTTCCTTTCTCCATGTATCTTCTTTCTGCTGCTCAAAGTCCCTTGCAGATTGATCGAGAAATTTCCATCAGTTATGGCAACAAGGGAAATGAGGAACTTCTATATCTATACGGTTTTGTCATTGATGATAACACAGATGACTATCTCATGGTACACTATCCAGCAGAAGCAATTAATACTATTTCTTTTTCAGAGTCCAAAAGCCAGCTTCTTGAAGTGCAGAAAGCTGAAATGAGATGTCTTTTACCCAAAACTTTGCTGGATCATGGATTTTTTCCTTTAGGGACCCAAAACAGTGGAGAAAATAACAAAGGCAAGGTGGATCAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAGATGCCATCTTATGTGAACAAGCTGGTTTTTCCTGAGAAATTTATGACTACCTTGAGGACCATAGCCATGCAAGAAGATGAGCTTTTCAAGGTTTCCTCAATGCTGGAAGAGCTTGTTGGACCTGAAGGGCAGAGACAACTATCAGATACAGATGTCCAATCAGCAATATGGGAGGTTTGCGGTGATTCCGGAGCTTTACAATTGCTTGTTGATCTTCTCAATGTGAAGTTGATGGATCTTGAAGAGAGTTCCGGAACAGAGGAAAGTGACCTTGATTTGCTCAAGAAGGCCCTTATTATTGATAGCCAGGAAGATAGCAAACAGTGCATGAGCAATTTAAGCACAGTGACAAATGACTCAGAGGAGTCAAAGTTGATGACTAGAAACAAGTGGTCTGCTATAGTATATCGGCGAGGCCAAAAGCAGCTAACTCGATTATTCTTGAAAGAAGCAGAACATGCTCTGCAGTTATCACTGAACGAAGAAGAGGTGAGAAGGTCGGTTTGA 1680 0.4113 MANHEEAKLETFVQWLQANGVDLRGCNIKYSDSRKGFGIFSDKDISDGVLLVVPLDLAITPMRVLQDPLLGPECRALFEEGDVDDRFLMMLLLTVERLRKNSLWKPYLDMLPTTFGNPLWFSDDELIELRGTTLYRATELQKKSLLSLYETKAKHLVKKLLTQDGDSEIEVCFEDFLWANSVFWSRALNIPLPRSYVFPKMQEGDDSCILEANEKSDEVKKSDNLTKEMTCNTVQGDTVWVEGLVPGIDFCNHDLKPIATWEVDGTGLTTGVPFSMYLLSAAQSPLQIDREISISYGNKGNEELLYLYGFVIDDNTDDYLMVHYPAEAINTISFSESKSQLLEVQKAEMRCLLPKTLLDHGFFPLGTQNSGENNKGKVDQVCNYSWSGQRKMPSYVNKLVFPEKFMTTLRTIAMQEDELFKVSSMLEELVGPEGQRQLSDTDVQSAIWEVCGDSGALQLLVDLLNVKLMDLEESSGTEESDLDLLKKALIIDSQEDSKQCMSNLSTVTNDSEESKLMTRNKWSAIVYRRGQKQLTRLFLKEAEHALQLSLNEEEVRRSV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3968g00016 559 CDD SET_LSMT 31 311 - -
Gabi3968g00016 559 SUPERFAMILY SET domain 8 315 IPR046341 -
Gabi3968g00016 559 ProSiteProfiles SET domain profile. 24 297 IPR001214 GO:0005515
Gabi3968g00016 559 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 497 - -
Gabi3968g00016 559 Gene3D set domain protein methyltransferase, domain 1 5 311 - -
Gabi3968g00016 559 Pfam SET domain 36 297 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3968g00016 Gabi-Chr3968 154236 162467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3968g00016 8 224 NAC Transcription Factor Family AT3G56570 26.316 2.34e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3968g00016 SET 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3968g00016 - - gmx:100777394 970.304