Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3968g00011 ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTTAAACCCTATGCACGCAACGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTGTCCTTCTGGATTGTTCAGCACGAGAATGCCATCAAGAACCATGCCAGGAAACCCCATCTTAGGCTCATGTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCAGTGTTCATTGTTGATGGTACTCCGTCCCCTTTGAAATCACATGCTAGGATTTCAAGATTTTTCCGGTCTTCTGGCATTGAATTGACTAGCTTGCCAGTTCCTGAAGAAGGTGTTTCAGCCGAAAGGAATCGATCATTTTCAAGTTGTGTTCAAGAATGTGTGGAACTTGTTGAGCTACTTGGAATGCCTGTATTAAAATCTAAAGGAGAGGCCGAAGCACTCTGTGCTCAATTGAATAGCGAAGGTCATGTAGATGCCTGCATCACAGCAGATAGTGATGCATTCCTCTTTGGGGCCAAATGCATTATAAAATGTTTCCATACCAATTCCAAAGAACCATTTGAATGCTACGATATGTCTGATATTGAAGCTGGCCTTGAGTTGAAGAGGAAACACTTCATAGCTATCTCTCTTTTGGTCGGAAATGATCATGATATGAATGGTGTTCAAGGGATTGGGCTTGATACTGCTCTTAAGTTTGTTCAAGCTTTTAGTGAAGATGATATATTGAATAGATTACGTGAGATAGGCAAAGGGAATGTTTCACAAGTTCCCTTCAGCATTAAATCTGACGATAATATGGATACGGATGGTAACTTTCCAAATACAAAACAACCTCACTGCTCATTCTGTGGGCATCCTGGCAAAAAAAGAGATCATATGAAGTTTTCATGTGAATATTGCATCACCAATGACAATGAAGGTTGCCTGAGAAAACCAGAGGGTTTTAAATGTGATTGCGTCCCCTGTGATATGAATAGGAAACATAAGAGACAACAACAGCTGGAAAATCGGCACACAAAAATTTGTCACAAGATTGCTGACGAGCCAAATTTTCCCAAGGATGAAATCATTGACATGTATTTATGCAATGACAATGGTTACTTTTCTGCAAATGATGGCCCTAGCATCTTATGGGAAAGACCCAATATTGAGATGTTGGTTGATTTTTTGAACTTCCATCAGCGCTGGGATCCGTCCTACGTTCGACGGATGATGTTTCCTATGATGTCCACAATCTTTTTGAGGGATATGGCTACAACTAGAGTAAAAAGTTTGTTATTTGGACAATATGAGTTTGATTCTTTAGAACGTGTGAAGATGAAATATGGACATCAGTTTTATGTGGTCAAGTGGAAGAAACATGCAGGAGGAAACATTGCCTCTAAAATTCCATCAAATGAATCTAGCACGCAACAAGATGTTCCAGAGCTCGATGAATCGACGGATCTACTGGATGACTGTGATATTCCTGAGATACATGAAAAAAATGGATGTAGTTTTCTGTTGACAGATGAAAATATGGACCTTGTAGGGGCTGCTTTTCCAGCACAAGTTGACAGGTTTTGGCAGGAACAGGAACTGAAGGATTTGAAAAGAAGAAAGAATTCTACTTCAAGATCTCAAGAAAACGAAAATCCAAAAACACCAAACTCTGTCCAGCTAAACATTACAGAGTTCTACCAATCAACAAAGCTTAAACATCAACAATCAAAACAAGGTGAAAAGTCATCAAAGAATATTGATAGCCAAGGCAGTGGAGCCTCAAAAATGAAAAGGAAAATTTCAAGTCCTAATCTTCCAAAATCTGTTAGGCGTCGCCTTTTATTTGACTAG 1827 0.4001 MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHENAIKNHARKPHLRLMFFRTINLFSKFGAFPVFIVDGTPSPLKSHARISRFFRSSGIELTSLPVPEEGVSAERNRSFSSCVQECVELVELLGMPVLKSKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKCFHTNSKEPFECYDMSDIEAGLELKRKHFIAISLLVGNDHDMNGVQGIGLDTALKFVQAFSEDDILNRLREIGKGNVSQVPFSIKSDDNMDTDGNFPNTKQPHCSFCGHPGKKRDHMKFSCEYCITNDNEGCLRKPEGFKCDCVPCDMNRKHKRQQQLENRHTKICHKIADEPNFPKDEIIDMYLCNDNGYFSANDGPSILWERPNIEMLVDFLNFHQRWDPSYVRRMMFPMMSTIFLRDMATTRVKSLLFGQYEFDSLERVKMKYGHQFYVVKWKKHAGGNIASKIPSNESSTQQDVPELDESTDLLDDCDIPEIHEKNGCSFLLTDENMDLVGAAFPAQVDRFWQEQELKDLKRRKNSTSRSQENENPKTPNSVQLNITEFYQSTKLKHQQSKQGEKSSKNIDSQGSGASKMKRKISSPNLPKSVRRRLLFD 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3968g00011 608 Gene3D - 198 258 - -
Gabi3968g00011 608 MobiDBLite consensus disorder prediction 573 590 - -
Gabi3968g00011 608 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Gabi3968g00011 608 FunFam Flap endonuclease GEN-like 1 198 255 - -
Gabi3968g00011 608 Gene3D - 3 197 - -
Gabi3968g00011 608 SMART xpgn3 1 96 IPR006085 GO:0004518
Gabi3968g00011 608 CDD PIN_GEN1 2 202 - -
Gabi3968g00011 608 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 549 IPR006084 -
Gabi3968g00011 608 MobiDBLite consensus disorder prediction 539 565 - -
Gabi3968g00011 608 MobiDBLite consensus disorder prediction 527 608 - -
Gabi3968g00011 608 SMART xpgineu 128 198 IPR006086 GO:0004518
Gabi3968g00011 608 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 413 IPR036279 -
Gabi3968g00011 608 FunFam Flap endonuclease GEN-like 1 2 197 - -
Gabi3968g00011 608 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Gabi3968g00011 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Gabi3968g00011 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Gabi3968g00011 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Gabi3968g00011 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Gabi3968g00011 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Gabi3968g00011 608 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3968g00011 Gabi-Chr3968 125578 130941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3968g00011 16 243 Core DNA Replication Machinery Family AT5G26680 29.032 5.96e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3968g00011 K15338 - gmx:100779848 978.008