Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3968g00006 ATGGCAGAAACTGAAGCTAGGAAATATGCTTCTGCTACAAACAATAATAAGATTCAATTGAACAAACTGAACACCATCAAAAGGTTCATTGGGGTGAGGCAAAGACCTTCAGGAAGGTGGGTGGCAGAGATCAAAGACTCATCTCAACATGTAAGGTTATGGCTTGGAACCTATGACACACCAGAAGAAGCTGCCAGGGCTTATGATGAAGCAGCTAGAGCTCTACGTGGTGAAAATGCAAGAACAAACTTTGCATCATCAGAGAATAATCAAACCATGGAAAAATCTTCAGAAGCTTATTCCAATGATGGTGGAAAGAATGGATTAAGCACTTTTGCTTCATTGAGAGCCAAGTTGAGTAAGAATCTTCAGAGCATCATGGGCAGGTCCAGTGATTGCAAATCATCAAAAAGTAGGGTGAGTGACAATTTTACCTTTGCTAGCATATTCCATCAACACCAAATCTCTCCAATGGATGTTAAGAACATTGAGAAAGTGGTGCAGCCTAGCATTGTTGTGCCCCCTTTGGAAAATGAACATGCTTCTTGGGACAAATCTAGTGTTTCTAATTGTAGCTATGATTGGGTCGGGTTCCGGCAACCCGGGTTTGAATCCGGTTCCAATGGGTCGGATGTAAGGGAGTTTATGGTTGGTGGTGAACAAGGGTCTTTGGACCAATTGATGGGGTGGGTGAATAGCTCAGATATTTGTGCTTGTGATGGAAATGATGAGGGTTCAAGGAGCAAGAGGTTTAAGGTCTCTTCTTCTGTGGTTGTGCCCCCAACATTCAATGTGTCTCCATATGATTGTGGTTCTCCATACAATGTTCATGGCTCTCAATATAATGGTGGAAAGTGA 858 0.4254 MAETEARKYASATNNNKIQLNKLNTIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFASSENNQTMEKSSEAYSNDGGKNGLSTFASLRAKLSKNLQSIMGRSSDCKSSKSRVSDNFTFASIFHQHQISPMDVKNIEKVVQPSIVVPPLENEHASWDKSSVSNCSYDWVGFRQPGFESGSNGSDVREFMVGGEQGSLDQLMGWVNSSDICACDGNDEGSRSKRFKVSSSVVVPPTFNVSPYDCGSPYNVHGSQYNGGK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3968g00006 285 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 142 - -
Gabi3968g00006 285 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Gabi3968g00006 285 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Gabi3968g00006 285 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Gabi3968g00006 285 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Gabi3968g00006 285 FunFam ethylene-responsive transcription factor RAP2-11 27 86 - -
Gabi3968g00006 285 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Gabi3968g00006 285 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Gabi3968g00006 285 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Gabi3968g00006 285 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3968g00006 Gabi-Chr3968 77935 78792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3968g00006 28 85 AP2-EREBP Transcription Factor Family AT5G19790 74.138 4.92e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3968g00006 AP2 8.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3968g00006 K09286 - qsa:O6P43_017554 311.612