Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3968g00005 ATGGTGGAGGATGGTGGAGATGAGGTTGCACTTGATGCACGTTCCACAGAAGATTGGTTGTTGCATGCACAGGAACTTGTTCCTTTAGCACTTGATAAGGCAAGAGAGGTTAATGGGTTTCCTGGTAGATGGAAGATGATCATTTCGAAATTAGAACAGATCCCATCATGTTTATCAGACTTGTCAAGCCATCCATGCTTCTCAAAGAATGCTCTTTGCAAGGAGCAATTGCAAGCTGTGTCAAACACACTCAGAGAAGCGATTGGGTTGGCTGAGTTGTGTATGAAGGAGAAGTATGAGGGTAAGCTTAAAATGCAAAGTGATCTTGATGCATTAACTGGGAAACTGGATTTGAACTTAAGGGATTGTGGCCTTTTGATCAAGACTGGTGTGCTTGGTGAGGCTACTTTGCCATTGGCTTTGTGTGGTTCTGTGGTGGAATCGGATGTTGCAACACACAACAACATAAGGGAATTGCTGGCACGCCTTCAGATCGGTCACCTGGAAGCAAAGCACAAAGCTTTAGACAACCTTGTTGAAGTTATGAAAGAAGATGAAAAGAATGTTTTGGCTGTTATGAGTCGGAGCAACATTGCTGCTTTAGTTCAACTGCTTACAGCTACATCTCCAAGGATAAGGGAGAAGACAGTTACTGTTATATGCTCGCTTGCAGAATCCGGTAGCTGCGAGAATTGGCTAGTTTGTGAAGGAGTTCTGCCACCTCTTATAAGGCTTGTTGAATCAGGAAGTGCTGTGGGTAAAGAGAAGGCAACAATATCCCTTCAGAGGTTGTCAATGTCAGCAGAAACAGCGCGTTCAATCGTTGGACATGGTGGGGTTCATCCACTGGTTGAGCTTTGTCAAACTGGTGATTCTGTGTCACAAGCTGCTGCTGCTTGTACTCTGAAGAATATATCAGCTGTTCCTGAGGTTAGACAAGCTTTGGCTGAAGAAGGGATTGTGAGGGTTATGACAAATTTGCTTAACTGTGGCATTTTGTTAGGTTCCAAAGAGTATGCAGCAGAATGCTTGCAGAATCTCACTGCAAGCAATGAGAATCTAAGGAGGAATGTTATATCAGAAGGTGGTGTTAGGAGTCTTTTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCTGTTGGAGCATTGAGGAATTTGGTTGGATCAGTTTCTTGGGAAACTTTGGTTTCTCTTGGTTTCCTTCCCCGTTTGGTTCATGTGCTAAAGTCTGGATCCTTGGGTGCTCAACAAGCTGCGGCATCTGCGCTATGCCGGGTTTGCGGCTCAACAGAGATGAAGAAAATGGTTGGTGAGGCTGGATGCATCCCTCTCCTTGTTAAGATGCTTGAGGCTAAATCAAACAGTGCTAGAGAGGTTGCTGCACAAGCAATTGCAAGCTTAATGATTCTGTCTCAGAATTGTAGGGAAGTTAAGAAGGATGATAAAAGTGTGCCAAACCTGGTTCAGTTGCTTGATCCAAGTCCACATAACACTGCAAAAAAATATGCAGTTTCTTGCCTTGGATCACTTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGAGCAATTGGTTATCTGAAGAAACTTACAGAGATGGACATTCCAGGAGCTAAAAAGCTACATGAACGATTGGAAAGAGGGAAATTGAGAAGTTTATTTAGCAAGACATAG 1683 0.4332 MVEDGGDEVALDARSTEDWLLHAQELVPLALDKAREVNGFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSNTLREAIGLAELCMKEKYEGKLKMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLALCGSVVESDVATHNNIRELLARLQIGHLEAKHKALDNLVEVMKEDEKNVLAVMSRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVCEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARSIVGHGGVHPLVELCQTGDSVSQAAAACTLKNISAVPEVRQALAEEGIVRVMTNLLNCGILLGSKEYAAECLQNLTASNENLRRNVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVSWETLVSLGFLPRLVHVLKSGSLGAQQAAASALCRVCGSTEMKKMVGEAGCIPLLVKMLEAKSNSAREVAAQAIASLMILSQNCREVKKDDKSVPNLVQLLDPSPHNTAKKYAVSCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRSLFSKT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3968g00005 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 559 - -
Gabi3968g00005 560 SMART arm_5 471 513 IPR000225 GO:0005515
Gabi3968g00005 560 SMART arm_5 308 349 IPR000225 GO:0005515
Gabi3968g00005 560 SMART arm_5 185 225 IPR000225 GO:0005515
Gabi3968g00005 560 SMART arm_5 350 389 IPR000225 GO:0005515
Gabi3968g00005 560 SMART arm_5 430 470 IPR000225 GO:0005515
Gabi3968g00005 560 SMART arm_5 394 429 IPR000225 GO:0005515
Gabi3968g00005 560 SMART arm_5 267 307 IPR000225 GO:0005515
Gabi3968g00005 560 Pfam Armadillo/beta-catenin-like repeat 431 468 IPR000225 GO:0005515
Gabi3968g00005 560 Pfam Armadillo/beta-catenin-like repeat 273 307 IPR000225 GO:0005515
Gabi3968g00005 560 SUPERFAMILY ARM repeat 154 540 IPR016024 -
Gabi3968g00005 560 Gene3D - 147 374 IPR011989 -
Gabi3968g00005 560 Gene3D - 375 544 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3968g00005 Gabi-Chr3968 71314 73375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3968g00005 400 543 U-box Gene Family AT3G54790 29.167 2.12e-06 48.9