Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3965g00001 ATGGCAACAAAGCCAAACACACGCAAGAGAAAATTTGAAATTAAGAAAGTGGAACAAAAGATCAAGGAAAGAATGACTTTCCCCAAACATGAAGTAGGGCTTTTCAACAAAGTCACTGAATTATCCATTCTATGCGAGGCAGAAATAGCATTGATCATCAACTCTGAGAAGAATGGCAACCTTCATGCTTGTGGCTATCCCAGTACAGACACTGTCATTCAACGCTTCGTTGCAGGAAGGTATTCGGATCCCAACCGATATGTCCGTGATGATGAAAGGAAGAAGCAACAGGCACTTGAATCCTTAATTCTACAATATGAGGCCTCCGAGGCTCAATTGGAGGAGAGAAAGATGCATCTGCAAGCAATGTCACAAATCATGACTGATAGCTTCTTTAACTTTTGGTGGGAAAATTCGATTGAGGAGATGAGTTTGGGCGATCTTGAGAACTTCAAGGCTTCTTTGGAAAATTTGAAGCTTAATTTGGTTGCTATAGCACAAGAGAAGAAGTTCAATTCACTGCGACCACAACCACTTTCAATTGTTTCCTCCCTCACAGATATCAAATCTTGA 573 0.4084 MATKPNTRKRKFEIKKVEQKIKERMTFPKHEVGLFNKVTELSILCEAEIALIINSEKNGNLHACGYPSTDTVIQRFVAGRYSDPNRYVRDDERKKQQALESLILQYEASEAQLEERKMHLQAMSQIMTDSFFNFWWENSIEEMSLGDLENFKASLENLKLNLVAIAQEKKFNSLRPQPLSIVSSLTDIKS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3965g00001 190 Gene3D - 20 102 IPR036879 GO:0003677|GO:0046983
Gabi3965g00001 190 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Gabi3965g00001 190 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Gabi3965g00001 190 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Gabi3965g00001 190 SUPERFAMILY SRF-like 8 78 IPR036879 GO:0003677|GO:0046983
Gabi3965g00001 190 SMART madsneu2 7 67 IPR002100 GO:0003677|GO:0046983
Gabi3965g00001 190 ProSiteProfiles MADS-box domain profile. 7 58 IPR002100 GO:0003677|GO:0046983
Gabi3965g00001 190 Coils Coil 96 116 - -
Gabi3965g00001 190 Coils Coil 148 168 - -
Gabi3965g00001 190 PANTHER MADS BOX PROTEIN 10 162 - -
Gabi3965g00001 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3965g00001 Gabi-Chr3965 24164 24736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3965g00001 9 159 Type I MADS-box Gene Family AT5G60440 32.258 1.13e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi3965g00001 SRF-TF 7.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3965g00001 - - cam:101507050 153.68