Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3960g00007 ATGGCAAAAGAGCAACTAAAGCAGGACCCTGCAGCAATCACCACCAACACTTGCCAAAAGCAAAACCAGGTTTTGTATATGTTGAGAGACATCACAGCAGGGCCTACGTTTATGTTCACTCAATGGCTTCATTTAGTTCGTAAACGCACTTCCAAGTATCGCTACTCTGGCTTCCCCTACCGTCCTTCCACCATGTCTTTTAGCACCGGAGAATCTACTGAGGATGCACAAATTGATCAGGTTCCCCAACAAACAGAAATTAGTCTGTGGGAGAGACTTGGTAAAGCTGAAATGTTGGATATTGAATCGAGTTCCTTTTCTTGGGACAGACTCTCTTCACTTCACCATACTGAGCACACTAGCAGCAATGAACATTCTGAGGATGAAATGAACAGAGCTCTTGAGGTAACAGTCAATTCTGGAGGGGTTGTCTTCTTTGCCTTTTTCAATGGCCTTGGGAGTGATGATGCTTTTCCAAAAGAAGCAGCTGCTGTTATAAAGATATCATCATCAAGAATGTCAACACAATCTGAACGCCTTGGTTATGAATTTGCCAAGTGGTTGGGAGTCCAGACTCCGCAGGCTAGAGTCATTCACAATACTAGTTTGGAATGGCTCCAAATAAAGGAAGCTACAGAAAAAGCGAGAGATGCAGCAAGTTCTGAGGGTGATGAAACTGGTGAAATGACATGTTTAGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTTTTGTTTATGAGCTATGTACATGGTTCACCTTTGCTTGAAAGCTCTAGCGCATTTGAATTGCAGAAATCTGCAGAAAGAACATCAGCAGCCCTTGGCAGGGTAATGATACTTGATCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCATCAGCTTAGATGGCGTGGGAACTCTGCGAATTTGTTATTGGCTGAAAAGATGATCTCTGCAAATACAGATACACTGGGAGAAGCTTTTGATTCTGCAATGAACCGATATGGACCAAGGGTGATTAAGCCACTTCAAAAAGAAAGAAGGTCAATTTCAGTAGATAGCAGATTGAGTTCTCATAATCCTGGATTGGTATCACAAGGATCTGATCTTTTAGAGATCACGGAATCATCAATATCCACTGAGATGAGCCTCAAAAGTCGAATGTCAGGAGAATCAATGTTCACTGACTTTAACATTGTGGCTATTGACTCTGGCGTTCCTCGCCGTCCCCCTGCTGGAAAACGTGCAAATGATCAGATTAATTATCCTAAGTTGGTTGAGTTACTACTCAATAGCTCTGAGTTTTCCTCTAACCTGTTACATGATATAACTGGAGGGAGATTAGGATGTCCTCCCCCAGAAGACATAAATACAACAACCGGTTTACATGCAGGTGATGTAACATCAGTGGTTCATGAGTTCCGTAGTGGCTTCCGTGCTGCTCTTAGGGATCTGCAGGGTTTCCATATATTTCTACTCACACTTCACCAAAAACTTGATAACTTGTTACGATCATTTATGAATATTATGAGTAAAATATCATTGGAGGAGTCTGAAAAAGAGGATGCAGTGGTTCCTGACTCACCTTCACTGGCTGCTACTGGTAGTTGTCCCTCTCCAACAAGTAAGGAGAGGTTTTCAAATGATAACCATCAAGATGTTAGTGATTCAGAGTCACAAAGAACTGCTCCAAGAGCATCATCATCTTCAGGAAATAGAGATTGCTGTGACTCTGCTTCTGTGTCAAGAGAAAATTGGCATGGAAAGTTCTCTAAAGGAAGCAGGGAGCCACTTCTTGGTCCGCGCTTGACAGCTAAACTCCGTGACTTCCATAAATATGCCAAGGTTGACACAGAATCTAATAAAGAATTGGAACAATGGAATGAAATGCTTAAAAATGAAGCTATCAAATTATGCCAGGAGAACAATTTCAATACAGGGTTTTTTGAAGGTAGTGATAACAACACTGTTGTTGATGCATATGAACTGAAGGTCAGACTTGAGCACATCCTTGAGAGGATTGTATTGATATCTGAGGCTGCAAATACAGAGAGACCTTCTGCTGTTACAAATAGCCTATTCATTGGTGGTGCACTGGCTGCAAGATCTGTATACACACTGCAACACTTGGGAATCACTCATATTTTATGTTTGTGTACTAATGAAATTGGACAGTCAGATTCTCAGTTTCCTGATCAATTCACATACAAAAATTTCTCTGTGTGTGACAATGAAGATTCTAACATCAGCAGCATATTTGAAGAAGCCTGTGATTTTATAGGTTATGTTGAGCAAACAGGTCAGAGAGTTTTAGTTCATTGCTTTGAGGGGAGAAGCAGAAGTGCCACTTTGGTCCTTGCTTACTTGATGCTCAGGAAGAACTTCACTTTATTAGAAGCATGGAATGCTCTGAAGCGAGTTCACCGGCGAGCACAACCCAACGATGGTTTTGCAAAGATCTTACTGGAGCTTGATCAGAAACTGCATGGGAAAGTTTCAATGGAGTGGCAGCAGCGGAAACCAATGATGAAAATTTGCCCTATATGTGGGAAGAATGCTGGACTAAGCAGCAGCTCACTTAAGCTACATCTTCAGAAATCACATAAAAAGTTATCATCAGGAAGCGTAGATAGTGCCATGACAATGGAGATCCAAAAGGCTTTAACAGCTTTGAAGATTAGCCGCGGTGGGAGTGTCAGCCCCACACAACAACAGCCTCATTCAATGATATATGAATAG 2724 0.4185 MAKEQLKQDPAAITTNTCQKQNQVLYMLRDITAGPTFMFTQWLHLVRKRTSKYRYSGFPYRPSTMSFSTGESTEDAQIDQVPQQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTSSNEHSEDEMNRALEVTVNSGGVVFFAFFNGLGSDDAFPKEAAAVIKISSSRMSTQSERLGYEFAKWLGVQTPQARVIHNTSLEWLQIKEATEKARDAASSEGDETGEMTCLELLEALELSRCLLFMSYVHGSPLLESSSAFELQKSAERTSAALGRVMILDLVIRNEDRLPCHQLRWRGNSANLLLAEKMISANTDTLGEAFDSAMNRYGPRVIKPLQKERRSISVDSRLSSHNPGLVSQGSDLLEITESSISTEMSLKSRMSGESMFTDFNIVAIDSGVPRRPPAGKRANDQINYPKLVELLLNSSEFSSNLLHDITGGRLGCPPPEDINTTTGLHAGDVTSVVHEFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRSFMNIMSKISLEESEKEDAVVPDSPSLAATGSCPSPTSKERFSNDNHQDVSDSESQRTAPRASSSSGNRDCCDSASVSRENWHGKFSKGSREPLLGPRLTAKLRDFHKYAKVDTESNKELEQWNEMLKNEAIKLCQENNFNTGFFEGSDNNTVVDAYELKVRLEHILERIVLISEAANTERPSAVTNSLFIGGALAARSVYTLQHLGITHILCLCTNEIGQSDSQFPDQFTYKNFSVCDNEDSNISSIFEEACDFIGYVEQTGQRVLVHCFEGRSRSATLVLAYLMLRKNFTLLEAWNALKRVHRRAQPNDGFAKILLELDQKLHGKVSMEWQQRKPMMKICPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQQQPHSMIYE 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3960g00007 907 SMART dsp_5 680 822 IPR020422 GO:0006470|GO:0008138
Gabi3960g00007 907 Pfam Actin-fragmin kinase, catalytic 86 401 IPR015275 -
Gabi3960g00007 907 Gene3D - 255 378 IPR036940 -
Gabi3960g00007 907 FunFam Dual specificity protein phosphatase PHS1 652 826 - -
Gabi3960g00007 907 CDD DSP 681 818 - -
Gabi3960g00007 907 SUPERFAMILY Protein kinase-like (PK-like) 41 415 IPR011009 -
Gabi3960g00007 907 ProSitePatterns Tyrosine specific protein phosphatases active site. 767 777 IPR016130 GO:0016311|GO:0016791
Gabi3960g00007 907 MobiDBLite consensus disorder prediction 512 571 - -
Gabi3960g00007 907 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 745 801 IPR000387 GO:0016311|GO:0016791
Gabi3960g00007 907 ProSiteProfiles Dual specificity protein phosphatase domain profile. 680 825 IPR020422 GO:0006470|GO:0008138
Gabi3960g00007 907 Pfam Dual specificity phosphatase, catalytic domain 693 821 IPR000340 GO:0008138|GO:0016311
Gabi3960g00007 907 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 680 825 IPR029021 -
Gabi3960g00007 907 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 904 IPR035010 GO:0004721|GO:0009737|GO:0043622
Gabi3960g00007 907 Gene3D Protein tyrosine phosphatase superfamily 662 835 IPR029021 -
Gabi3960g00007 907 MobiDBLite consensus disorder prediction 554 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3960g00007 Gabi-Chr3960 59325 66038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3960g00007 22 891 Protein tyrosine phosphatase (PTP) family AT5G23720 65.721 0.0 1124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3960g00007 K14165 - gmx:102661225 1382.47