Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3960g00006 ATGGTTTTGCTTCATCTTAGTTTTTCCTTGGAAGTTTTCTGTCTCTCTTCTAATGCAGATAGCATTGCTGCTCTTCCTGGGCAACCCTTCATAGGCTTTCAACAGTTCTCAGGATATGTCACTGTTGATGACAAGGAACACAAGTCTCTCTTTTACTATTTTGTTGAATCAGAAACTGATCCAGCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTGGGAGTGGGTGCATTCTCTGAAAATGGACCCTTCAGACCAAATGGGGAATTTCTGATTAAAAATGAGTATAGTTGGAATAGAGAGGCAAACATGCTGTATTTGGAGACACCAATTGGAGTGGGGTTCTCTTATGCTAAAGGTAGCTCCTCCTATATGACAGTGAATGATGAGGCAACAGCCAGGGACAATCTTGTATTCCTGCAACGCTGGTTCTATAAGTTTCCCCAATACAGGAACAGAGATTTGTTTCTTACAGGGGAAAGTTATGCAGGTCATTACGTTCCTCAACTTGCAAAGCTCATGATTGAAATGAACACAAAGAACAAGATATTCAATCTGAAAGGAATAGCCATGGGTAATCCAGTTCTAGAATACGCCACTGACTTCAATTCAAGGGCTGAGTTCTTCTGGTCTCATGGACTAATATCAGATTCAACGTACAACATGTTCACCACAGTGTGTAATTATTCTCGGTATGTCAGTGAATATTATAGAGACTCAGTTTCGCCTCTTTGTTCAACGGTTATGGGCATAGTGACCAAAGAAACCAGTAAATTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCCTCAGTGCTATCACAATCCAAGGTTATTTGTCCTCAAACACAACAAGCAAATGAGATGATAGATGTGTGTGTAGATGACAAGGTTACAAACTACTTAAACCGGAGAGATGTACAAGAGGCACTTCATGCCAAGCTTGTTGGAGTTCGCAAGTGGGATGTATGCAGCAACATCCTGGACTATGATATGCTCAACCTGGAATTGCCTACACTACCTATTGTTGGATCACTAATAAAAGCTGGAGTTCGGGTCTTAATTTATAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGCACCTTAGTTCAAAAGTTGGCAAGAAAATTAGGACTGAATACAACAGTCCCTTACAGAGTGTGGTTTGAAGGCCAACAGGTTGGTGGGTGGACTCAAGTTTATGGCAATATCCTCTCATTTGCCACTGTTAGAGGTGCCTCCCATGAAGCTCCTTTCTCGCAGCCTGAAAGATCATTTGTGCTATTCAAGTCATTCTTGGAAGACAGGCCTTTACCTGAAATTTTCTGA 1362 0.4163 MVLLHLSFSLEVFCLSSNADSIAALPGQPFIGFQQFSGYVTVDDKEHKSLFYYFVESETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIKNEYSWNREANMLYLETPIGVGFSYAKGSSSYMTVNDEATARDNLVFLQRWFYKFPQYRNRDLFLTGESYAGHYVPQLAKLMIEMNTKNKIFNLKGIAMGNPVLEYATDFNSRAEFFWSHGLISDSTYNMFTTVCNYSRYVSEYYRDSVSPLCSTVMGIVTKETSKFVDKYDVTLDVCISSVLSQSKVICPQTQQANEMIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWDVCSNILDYDMLNLELPTLPIVGSLIKAGVRVLIYSGDQDSVIPLTGSRTLVQKLARKLGLNTTVPYRVWFEGQQVGGWTQVYGNILSFATVRGASHEAPFSQPERSFVLFKSFLEDRPLPEIF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3960g00006 453 Gene3D - 301 337 - -
Gabi3960g00006 453 Gene3D alpha/beta hydrolase 16 278 IPR029058 -
Gabi3960g00006 453 FunFam Carboxypeptidase 347 446 - -
Gabi3960g00006 453 SUPERFAMILY alpha/beta-Hydrolases 26 450 IPR029058 -
Gabi3960g00006 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 123 IPR001563 GO:0004185|GO:0006508
Gabi3960g00006 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 149 174 IPR001563 GO:0004185|GO:0006508
Gabi3960g00006 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 416 429 IPR001563 GO:0004185|GO:0006508
Gabi3960g00006 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 100 112 IPR001563 GO:0004185|GO:0006508
Gabi3960g00006 453 FunFam Carboxypeptidase 15 450 - -
Gabi3960g00006 453 Pfam Serine carboxypeptidase 29 445 IPR001563 GO:0004185|GO:0006508
Gabi3960g00006 453 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 22 433 IPR001563 GO:0004185|GO:0006508
Gabi3960g00006 453 ProSitePatterns Serine carboxypeptidases, serine active site. 163 170 IPR018202 GO:0004185
Gabi3960g00006 453 Gene3D - 347 445 - -
Gabi3960g00006 453 ProSitePatterns Serine carboxypeptidases, histidine active site. 416 433 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3960g00006 Gabi-Chr3960 29885 32577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3960g00006 309 449 Calmodulin-binding Proteins AT2G22960 29.078 1.92e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3960g00006 K16297 - gmx:100795668 857.825