Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3959g00004 ATGCAAGACCCAACAACATTCCAACCCATGAAGCCTAACTTTCCTGAACAAGAACAACTCAAATGCCCACGTTGTGATTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTTTCACAGCCTCGCCATTTTTGCAAGAATTGTAGAAGGTATTGGACCAAAGGTGGTTCTTTGAGAAACATCCCAGTTGGGGGTGGAAGCAGAAAGACCACAAAACGTTCATCATCAAACTCCAAGCGTTCTGCATCATTATCTTCCCCATCACCATCAGTGTCCTCTGCAGCACAGGTTGCAGCTCCAGAGGCTGACCCGACCCGGGTTTACACTAACCCGGTTGATCAAGACCAACGGGTCCTGAACATTGGTGGGAGTTTCAGTTCCCTTCTGGCATCAAATGGGCATTTTGGGAATCTCTTTGAGGGTCTGAATTCAAGTGGGTCAAGTCTAAAAATGGTGCAAATGGGTGATTTTGAGGAGAATGTGAGTTGTGGCCCAGTTGTGAATTCGGATTCGGGTAGAAACCCGGGGTTAGAGATGCAGAGTAATGGGAACTCAGAGAGCTTTATGGGTATGCAAAATGGTGATTCAGGCTGTTGGAATGGCAGCCATGGCTGGTCTGATCTTGCAATATACACACCTGGCTCAACCTTTCAGTAG 663 0.4676 MQDPTTFQPMKPNFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGSRKTTKRSSSNSKRSASLSSPSPSVSSAAQVAAPEADPTRVYTNPVDQDQRVLNIGGSFSSLLASNGHFGNLFEGLNSSGSSLKMVQMGDFEENVSCGPVVNSDSGRNPGLEMQSNGNSESFMGMQNGDSGCWNGSHGWSDLAIYTPGSTFQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3959g00004 220 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Gabi3959g00004 220 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3959g00004 220 MobiDBLite consensus disorder prediction 165 188 - -
Gabi3959g00004 220 MobiDBLite consensus disorder prediction 61 113 - -
Gabi3959g00004 220 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Gabi3959g00004 220 MobiDBLite consensus disorder prediction 166 188 - -
Gabi3959g00004 220 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 176 IPR045174 GO:0003700|GO:0006355
Gabi3959g00004 220 MobiDBLite consensus disorder prediction 69 97 - -
Gabi3959g00004 220 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3959g00004 Gabi-Chr3959 32161 34097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3959g00004 5 141 C2C2-Dof Transcription Factor Family AT1G51700 59.589 3.45e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi3959g00004 zf-Dof 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3959g00004 - - gmx:100790822 304.679