Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3957g00069 ATGGAGAGTGGAGGTTTTCATGGCTACCGCAAGCTACCCAACACTAGCTCTGCAGGGTTGAACGTGAGGCAGGTAGCAGGAGAGAACAACCAGTCAGGAACAGGAACAGGAACAGAGGAGAATGAATGCATGGTGAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATTAGGATAATGCGGAAGATCCTACCGCCACATGCAAAAATATCTGATGATGCAAAAGAAACAATCCAAGAGTGTGTGTCTGAATATATAAGCTTCATAACTGGGGAGGCAAATGAGCGTTGCCAGAGGGAGCAACGCAAGACAATCACTGCGGAGGATGTGCTTTGGGCTATGAGCAAGCTAGGATTTGATGATTATATTGAACCACTCACAATGTACCTTCACCGATACCGTGAGATGGAGGGTGACCGCACCTCTATGAGAGGTGAACCACTTGGGAAGAGGACTAGTGTGGAATATGGGACTACTCTTGTTGCTTCTGCTGCTTTCGTTCCACCGTTTCACATTGCTCATCATCATCATCATCATCCAAATGGATCGTATTTTGGTGCACCCATAGGGGGGACTTACATGAGGGATGCTGCACCAAATCCAAATGCAAATGCAGGTGGCTCATCTCAGGCTCCACTCACAAATGCTGAACCAAATGGTCAATATAAATGA 675 0.4667 MESGGFHGYRKLPNTSSAGLNVRQVAGENNQSGTGTGTEENECMVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRTSMRGEPLGKRTSVEYGTTLVASAAFVPPFHIAHHHHHHPNGSYFGAPIGGTYMRDAAPNPNANAGGSSQAPLTNAEPNGQYK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3957g00069 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Gabi3957g00069 224 MobiDBLite consensus disorder prediction 197 224 - -
Gabi3957g00069 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 180 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi3957g00069 224 SUPERFAMILY Histone-fold 48 156 IPR009072 GO:0046982
Gabi3957g00069 224 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3957g00069 224 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi3957g00069 224 Gene3D Histone, subunit A 39 157 IPR009072 GO:0046982
Gabi3957g00069 224 MobiDBLite consensus disorder prediction 203 224 - -
Gabi3957g00069 224 FunFam Nuclear transcription factor Y subunit B-6 40 156 - -
Gabi3957g00069 224 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Gabi3957g00069 224 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Gabi3957g00069 224 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3957g00069 Gabi-Chr3957 607710 609474 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3957g00069 1 186 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.538 1.91e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi3957g00069 CBFD_NFYB_HMF 6.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3957g00069 K08065 - cave:132172851 292.737