Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3957g00048 ATGGGTAGTGATGAGGCACAAGAGTCATTGCTTTCAGAGCCAAGAGATCATTCTCATCTCAACGATAAGAGTGACCTCCAGAGAAGAAGACCCCGGCGTGGCAGTGCTTCAGGGACAGAGATCAATATCCAAGAACAAAATGTTGTCCAAAACCCTTTACACCTTCAATATATAGCTACAAAACCACAAGCAGAATTCCATTTCAAGCCTGTGTTATTGTGGTTAGCTGCCTACCTAGGTGGAGGTACCCTATGTTTCTTTCTCACAAGTTATCAAATCGAGGGTATAAAAACCAATGGGTTTCTTGATGCCATTTACTTCTGTGTTGTGACTATGACTACTGTTGGATATGGAGATCTTGTACCCAATAGTTCAGTGGCAAAACTTTTTGCCTGCATTTATGTATTCACTGGCATGGCTCTTGGTGGGTTAATTCTTAGCAAGGCAGCAGATTACATTGTTGAAAAGCAGGAAATCTTGCTTGTTAGAGCTATTTACAAAGGTGGAAAAGTTGGTTTAGAAGAGCTTTCCAAAGAGATTGAATCTAACAAAGCCAAATACAAATTCATGCTGGCAGCATCCACCTTTTTATTGCTTATGGTAGTAGGAACTATTTTTCTGTATTTTATTGAAAATCTAGATTTTGTGGATGCCCTCTATTGTGTTTGTTCCACAGTCACTACTTTGGGTTATGGGGATAAGAGCTTCTCCACTACTGTTGGTCGTACTTTTGCTGTGTTCTGGATACTGAGCAGCACCATTTGCTTAGCTCAGTCTTTTGCCTATCTTGCTGAACTATATACTGAAGAGAGACAAAAATCACTGGCAAAAATGGTTCTTGCACGAAAATTGTCACTCCTTGATCTTGAGGCAGCAGATCTTGATGGAGACAAAGCTGTTAGTGCTGCAGAGTTCGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAGCCAAGAAGATATTTCAGTTGTGATGGAGATTTTTAGAAAACTAGATTGTGATAAATCAGGAGCTCTGACAGAAGCTGATCTTAGATATTTTGAATCATCTTAA 1053 0.397 MGSDEAQESLLSEPRDHSHLNDKSDLQRRRPRRGSASGTEINIQEQNVVQNPLHLQYIATKPQAEFHFKPVLLWLAAYLGGGTLCFFLTSYQIEGIKTNGFLDAIYFCVVTMTTVGYGDLVPNSSVAKLFACIYVFTGMALGGLILSKAADYIVEKQEILLVRAIYKGGKVGLEELSKEIESNKAKYKFMLAASTFLLLMVVGTIFLYFIENLDFVDALYCVCSTVTTLGYGDKSFSTTVGRTFAVFWILSSTICLAQSFAYLAELYTEERQKSLAKMVLARKLSLLDLEAADLDGDKAVSAAEFVVYKLKEMGKISQEDISVVMEIFRKLDCDKSGALTEADLRYFESS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3957g00048 350 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 99 322 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gabi3957g00048 350 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Gabi3957g00048 350 Pfam Ion channel 196 267 IPR013099 -
Gabi3957g00048 350 Pfam Ion channel 76 154 IPR013099 -
Gabi3957g00048 350 SUPERFAMILY Voltage-gated potassium channels 65 155 - -
Gabi3957g00048 350 MobiDBLite consensus disorder prediction 9 35 - -
Gabi3957g00048 350 SUPERFAMILY EF-hand 290 347 IPR011992 -
Gabi3957g00048 350 Gene3D - 289 348 - -
Gabi3957g00048 350 SUPERFAMILY Voltage-gated potassium channels 182 282 - -
Gabi3957g00048 350 Gene3D - 55 164 - -
Gabi3957g00048 350 Gene3D - 171 288 - -
Gabi3957g00048 350 Coils Coil 173 193 - -
Gabi3957g00048 350 MobiDBLite consensus disorder prediction 1 41 - -
Gabi3957g00048 350 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gabi3957g00048 350 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3957g00048 Gabi-Chr3957 441217 444085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3957g00048 50 344 Ion Channels AT5G55630 55.593 5.96e-114 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3957g00048 K05389 - gmx:100799492 565.074