Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3957g00035 ATGGGCTCTTGCAAACTTTTCATTGGCGGGATTTCCCGAGACACAAATGAAGACACTCTCAGACAGTACTTCCAGAATTATGGAGACATTGTTGAAGCTGTGATAATGAAGGATCGGACCACAGGGCGTGCTCGTGGTTTCGGATTTATTGCTTTTGCTCATCCTGCTGTTGCTGAACGAGTTGTTATGGAAAAACATGTCATAGATGGTAGAATTGTTGAAGCAAAAAAAGCTATCCCTAGAGATGATCAGAATGTTCTGAGCAGAAGCAACAGCAGCATTCATGGGTCGCCTGGTCCTACTCCTATCCGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGACTTTAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTTGTTGTGATGTATGACCATAACACCCTAAGACCTAGAGGTTTTGGATTCATTACCTATGATTCTGAGGAAGCAGTGGAGAAAGTGCTGCACAAAAAGTTTCATGAACTGAATGCTAAAATGGTTGAAGTTAAGCGGGCTGTTCCAAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAGTTAGCTGGATATAATTATAGTACAAGTAGATTCAGTAGCTTTCCTAATGGTTGCATTCAGGGATATAATCCTAGCCTGGCTGGAGGGCATGGACATAGAATAGAAGGCTTGTTGAGTCCTGATACTGTTGGTCGTAGTGGATATCCTCCTTTGAGTCCTAGTTATGGGACAGGAATCAACTTTGAGCCAGCATTTAGCCAAACTGGAAGTGAAAATTTTAATTCTACACTTGTATTAGGAGGGGCATTAAACCCTTCATATAATGGAAGTTCAAGCAGGTACAATTATGCCATGGGGTATGCTGGTTCAAGTGTAGGCAACAATTCAACCGTAAGTTCAACAAATCAAAATTTGTGGGGGAATGGGAATCTTAATTATGCTACTAACCCTACAAACTCTGATGCTTTTGGTAGTATTGGAGCACTTACGAGTTCCTCCCCTAGTACAGGTCGAGCTGGAAGTATCGGCTATGGCTATGGTAAGGGCCGTCTTATTTATGGTTCTGGAGATGTGGATTTTGAATCAAAAGCAGTAGGTTATGGAAAAAGTGATGAACCAAATACTTCATCATATGCTCGCTCAAAGGGAAGTTATGATGGGGCATACAATGACATCAATGAAGTTAATTCATTTTATGGGGACCTTACTTGGAAATCATCATTACCTTCAGAACTAGAGGATTCTGGTTCTCTTGGTTTTGGCTTTGGAAATGCAGTTTTAGATTTGATGAGAAAAAGCTCTGGTGGCCGCATTGAGGCTTACGCTGTTGCCAATAGACAATCAAATAGAGGAATTTCTATTTAG 1386 0.4113 MGSCKLFIGGISRDTNEDTLRQYFQNYGDIVEAVIMKDRTTGRARGFGFIAFAHPAVAERVVMEKHVIDGRIVEAKKAIPRDDQNVLSRSNSSIHGSPGPTPIRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLHKKFHELNAKMVEVKRAVPKELSPGPSRGQLAGYNYSTSRFSSFPNGCIQGYNPSLAGGHGHRIEGLLSPDTVGRSGYPPLSPSYGTGINFEPAFSQTGSENFNSTLVLGGALNPSYNGSSSRYNYAMGYAGSSVGNNSTVSSTNQNLWGNGNLNYATNPTNSDAFGSIGALTSSSPSTGRAGSIGYGYGKGRLIYGSGDVDFESKAVGYGKSDEPNTSSYARSKGSYDGAYNDINEVNSFYGDLTWKSSLPSELEDSGSLGFGFGNAVLDLMRKSSGGRIEAYAVANRQSNRGISI 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3957g00035 461 CDD RRM2_Hrp1p 107 184 - -
Gabi3957g00035 461 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Gabi3957g00035 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Gabi3957g00035 461 SUPERFAMILY RNA-binding domain, RBD 3 97 IPR035979 GO:0003676
Gabi3957g00035 461 Gene3D - 103 189 IPR012677 -
Gabi3957g00035 461 SUPERFAMILY RNA-binding domain, RBD 99 204 IPR035979 GO:0003676
Gabi3957g00035 461 Gene3D - 2 86 IPR012677 -
Gabi3957g00035 461 SMART rrm1_1 107 179 IPR000504 GO:0003723
Gabi3957g00035 461 SMART rrm1_1 5 76 IPR000504 GO:0003723
Gabi3957g00035 461 FunFam Heterogeneous nuclear ribonucleoprotein 1 3 85 - -
Gabi3957g00035 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Gabi3957g00035 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Gabi3957g00035 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Gabi3957g00035 461 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 4 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3957g00035 Gabi-Chr3957 353703 357128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3957g00035 6 169 Eukaryotic Initiation Factors Gene Family AT2G36660 28.824 1.23e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3957g00035 K14411 - cave:132171089 595.504