Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3957g00033 ATGGTTTCTTCGGAGAAAGATTCTGACTCCACCATTTCAAACAAAATTCAGCGACACATCGGAATGTCCATGCGAACCATACGCTCCAATATATTCCAAGATGACCATGCTTGCTCCGAAAGATCCACCTGCGTCTCTAACAACTTGACCGGTACCCTCATAGACCTCGCTTCTCGAAACAACAAATCCGTTAAATCTTCCTCCGTTACGGAAGAACAACTCCTCGAACTTTCTCAAGCTTTCAGCGATTTCTCCGCTTGTAGCAGCGATATCTCCGGCGAGCTCCAGAGGCTTGCCACCCTCCCCTCATCGGAAAACAACCACGCGGCTGCTGACGTCGACAAGCAACCTGAGCCTGAGCCTGAACCCTGCGTAGGGTTCCTACAAAGGGAGAATTTCTCCACCGAGATTATCGAGAGTATTTCGCCGGAAGATCTTCTGCCGACGGTGAAGATCTGTATCGAAGGGTTACGATCGACGTCTGTCGCCGTTAAGCGATCGGCGGCGGCCAAGCTGAGGCTGTTGGCCAAGAACCGAGCTGATAACCGTGCTCTTATAGGTGAGTCCGGTGCGGTCCCTGCTCTGATTCCATTGCTCCGGTGCAGTGATCCGTGGACGCAGGAACACGCCGTGACGGCGTTGCTGAATCTGTCTTTGCTGGAAGACAACAAGGTGCTGATAACGAATGCGGGTGCTGTGAAGTCGCTGATTTATGTGCTTAAGACGGGGACGGAGACTTCGAAGCAGAACGCGGCTTGTGCGCTTCTGAGCCTTGCGTTGGTTGAAGAAAACAAGAGCTCCATCGGTGCTTGCGGGGCAATACCACCGCTTGTTTCGTTGCTGTTGAGCGGTTCAAACAGGGGAAAGAAGGATGCCCTGACGACGCTTTATAAGCTGTGTTCGGTGAAGCAAAACAAGGAGAGGGCGGTGAGTGCCGGAGCGGTGAAGCCCCTGGTGGATCTGGTGGCGGAGCAAGGGAGTGGTATGGCTGACAAGGCAATGGTGGTGCTGAATAGCTTGGCGGGGATTGAAGAAGGGAAGGATGAAATTGTGGAACAAGGTGGAATAGCTGCTCTTGTGGAAGCAATTGAAGATGGGTCGGTGAAAGGAAAGGAATTTGCTGTTTTGATTCTTGTACAGTTATGTGCTGATAGTGTTAGGAACAGAGGTTTGCTTGTGAGGGAGGGTGGGATTCCTCCACTGGTTGCTCTTTCTCAGGCTGGGACTGTTCGAGCTAAACACAAGGCTGAGATACTCCTTGGATATTTGAGAGAATCAAGACAAGAAGCATCCTCTTCAAGTCCTTAG 1308 0.5153 MVSSEKDSDSTISNKIQRHIGMSMRTIRSNIFQDDHACSERSTCVSNNLTGTLIDLASRNNKSVKSSSVTEEQLLELSQAFSDFSACSSDISGELQRLATLPSSENNHAAADVDKQPEPEPEPCVGFLQRENFSTEIIESISPEDLLPTVKICIEGLRSTSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALIPLLRCSDPWTQEHAVTALLNLSLLEDNKVLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGACGAIPPLVSLLLSGSNRGKKDALTTLYKLCSVKQNKERAVSAGAVKPLVDLVAEQGSGMADKAMVVLNSLAGIEEGKDEIVEQGGIAALVEAIEDGSVKGKEFAVLILVQLCADSVRNRGLLVREGGIPPLVALSQAGTVRAKHKAEILLGYLRESRQEASSSSP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3957g00033 435 Gene3D - 290 434 IPR011989 -
Gabi3957g00033 435 Gene3D - 129 289 IPR011989 -
Gabi3957g00033 435 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 313 355 IPR000225 GO:0005515
Gabi3957g00033 435 FunFam U-box domain-containing protein 4 136 288 - -
Gabi3957g00033 435 SUPERFAMILY ARM repeat 147 424 IPR016024 -
Gabi3957g00033 435 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 190 232 IPR000225 GO:0005515
Gabi3957g00033 435 FunFam U-box domain-containing protein 4 289 430 - -
Gabi3957g00033 435 Pfam Armadillo/beta-catenin-like repeat 263 301 IPR000225 GO:0005515
Gabi3957g00033 435 Pfam Armadillo/beta-catenin-like repeat 181 218 IPR000225 GO:0005515
Gabi3957g00033 435 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 272 314 IPR000225 GO:0005515
Gabi3957g00033 435 PANTHER U BOX DOMAIN-CONTAINING 73 423 - -
Gabi3957g00033 435 SMART arm_5 261 301 IPR000225 GO:0005515
Gabi3957g00033 435 SMART arm_5 385 425 IPR000225 GO:0005515
Gabi3957g00033 435 SMART arm_5 343 383 IPR000225 GO:0005515
Gabi3957g00033 435 SMART arm_5 220 260 IPR000225 GO:0005515
Gabi3957g00033 435 SMART arm_5 179 219 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3957g00033 Gabi-Chr3957 331521 333969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3957g00033 150 428 U-box Gene Family AT2G23140 50.538 1.02e-81 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3957g00033 - - qsa:O6P43_031331 643.654