Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3957g00026 ATGTCTGTCATCGAAACCCCCGCCGTCCATCACCGTCACCCCTCGAAGCGCAAATTCGACGATGACGAAGAAGAATTATCGGACCTAGTCTGTGTGAGGATGAGGAAAGACGAGCCGAAAGCGGTGACTTCATGTTCGGGGGGTTCTGGTGTTTTGCAGTTCTTCGTTCGAATGATGTCGGAAGGGAACACGATTGTGATGAAGGCTTTTCCCGAGGACACCGTGAAATCCATTCACGAACGTATACAAAGCATGAAGGGAATTCCTTTGTTCGAACAGAGGCTTATCTACCGTGGTAAGCAGCTTCAATCGGAGCAGACTCTCGCTGAGTGTTCCATACAAAACGATGTCATCCTTCAACTTGTTGGTCGCATGCGCAGCACCGAGTACCCTCAGGCTTGGCAGGTTATAAACGACATGATTTCAATCATTTGTAGTTTATGTAGGGGTGAGATTGTTCCTGATTCTTTGAAGACCATCAAGGCTCTCATAAGCAGTTACATGAACATGACCCCTAGGATTGACAGTGAATCAGCTTCTGGTTATTTTCAGATTTTTATTTCTTCCAATGCCCCTGCTGTGCTTGTTACGCTTTACCTCTCTCCCTATTCAGGTAACAAAGAATGTGCTGATTCTTCTATTAGGCATTTGTTGACTTGTTGTCGTTCTATGTGGTCTAAGGCATTGCACACTCAGTGTGCCCGTATGGTGTTGGCGTTTTGTAAATTGCTTATGAGAGTAGGTTCCCATGATCCTTTATATCTCTCTTGTCGGAGTACTTTAGGGTCCTTGTTGGAAACCACCCAGGTCTCCTTGTTTGCTCTTGATAATGGTAATGGATCCTTCAAGGATCAAGATATTTTCCCGGAATGGATCACTTATCATGATATTTTCCCCTTTGTTCGTGAGCTTGCAAATAGCTTGTTGAGGGATTTGGATTCGAGTATGGAATCCCCCTCTCGTGTGGGGCCTTTGATCAATGACGTTGCTGATTTTTCCTCATTCTTAAACCCTTTGAGGGAAGGAATAGCGGCAATGCGACTTCTCAGGATTGACAAACACCATAATGACCTCTTGCTTGTGGAAGAGATTGAATACCTTCACCTTTTATACATTCAGTTATTGAACAAAATCGATCAGTGCCTTCAAAAAATGGGGCAAAGCATGCCTAGCCAGGGAATAATGGAAGGGGATATTCTTTATCCTGCATGCTCTCAGTATCTTTCCATTATCAAGGAATTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAACTTTGGAGCGTTTTGAAGCGTCAAAGAAGTGTGCTGTGTGTACTAATCGTTAAATATGCAAAGAGGACTGACGAGCATCAGTGGATTCTCGAGCACAGGTGTGTGACAAATTTTGAGTCCAGGAGGCATTTGGCGATGATGATGTTCCCAGAGGTAAAAGAAGACTATGAGGAGTTACATGAGATGCTTATTGACAGGTCTCAGTTATTGACTGAATCTTTTGAATACATAGCACGAGCTGAGCCTGAATCTCTGCATGCTGGCCTTTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTTTGGTATCTCAAGCAATATTCAATCCACAAAATGCTTTATTTGTTGCATGCCCAAATGACCGAAAGAGATTTTTCCCCAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCGCTGGCCGAGTTATTGCATTAGCTCTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTACAATTGGCTGGAAAGAATATTACTTTAGAAGATATAAGGGATGCAGATCCTTGCCTGTATAGTAGCTGCAAGCAAATATTGGAGATGGATTCTGGTTTTGTTGATTCAGATGCATTAGGATTGACATTTGTTAGAGAGGTGGAGGAATTAGGACACAGGAAAGTGATTGAGCTCTGCCGTGGTGGGAAAAGCCTTGTTGTTGATAGTAAGAACAGGGAGAATTATATTGATCTTCTCATAAAGGATCAATTCGTAACATCCATATCTGAGCAGGTGTCACATTTTGCCAAAGGTTTTGCCAGTCTTCTTTCAAACTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCTCGAAGATCTTGATTGGATGCTGTGTGGGAGTGAAGATAGCATTTCTGTTGAAGATTGGAAAGCACACACTGAGTATAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGACAGCGGAACAAAGGAAGGTTCTTCTATTCTTTTGGACATCTGTGAAATATTTACCGGTTGAAGGTTTCCGGGGTTTGGCTTCCCGTCTCAACATTTACAGATCCCTTGAACCTGGTGATCGCCTTCCTTCTTCTCACACATGCTTTTACCGGCTGTGTTTCCCTGTTTATTCATCTATGGCTGTCATGCAAGATCGTCTTGAAGTCATTACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2547 0.4276 MSVIETPAVHHRHPSKRKFDDDEEELSDLVCVRMRKDEPKAVTSCSGGSGVLQFFVRMMSEGNTIVMKAFPEDTVKSIHERIQSMKGIPLFEQRLIYRGKQLQSEQTLAECSIQNDVILQLVGRMRSTEYPQAWQVINDMISIICSLCRGEIVPDSLKTIKALISSYMNMTPRIDSESASGYFQIFISSNAPAVLVTLYLSPYSGNKECADSSIRHLLTCCRSMWSKALHTQCARMVLAFCKLLMRVGSHDPLYLSCRSTLGSLLETTQVSLFALDNGNGSFKDQDIFPEWITYHDIFPFVRELANSLLRDLDSSMESPSRVGPLINDVADFSSFLNPLREGIAAMRLLRIDKHHNDLLLVEEIEYLHLLYIQLLNKIDQCLQKMGQSMPSQGIMEGDILYPACSQYLSIIKELYQISKLYDGAEEKLWSVLKRQRSVLCVLIVKYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVSQAIFNPQNALFVACPNDRKRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGKNITLEDIRDADPCLYSSCKQILEMDSGFVDSDALGLTFVREVEELGHRKVIELCRGGKSLVVDSKNRENYIDLLIKDQFVTSISEQVSHFAKGFASLLSNSKLQQFFFQSLELEDLDWMLCGSEDSISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTAEQRKVLLFFWTSVKYLPVEGFRGLASRLNIYRSLEPGDRLPSSHTCFYRLCFPVYSSMAVMQDRLEVITQEHIGCSFGTW 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3957g00026 848 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 53 846 - -
Gabi3957g00026 848 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 47 140 - -
Gabi3957g00026 848 SUPERFAMILY Ubiquitin-like 53 140 IPR029071 -
Gabi3957g00026 848 Gene3D Hect, E3 ligase catalytic domains 490 722 - -
Gabi3957g00026 848 Gene3D - 48 138 - -
Gabi3957g00026 848 CDD HECTc 487 846 IPR000569 GO:0004842
Gabi3957g00026 848 PRINTS Ubiquitin signature 63 83 IPR019956 -
Gabi3957g00026 848 PRINTS Ubiquitin signature 84 104 IPR019956 -
Gabi3957g00026 848 PRINTS Ubiquitin signature 105 126 IPR019956 -
Gabi3957g00026 848 Gene3D Hect, E3 ligase catalytic domain 731 847 - -
Gabi3957g00026 848 Gene3D Hect, E3 ligase catalytic domain 608 690 - -
Gabi3957g00026 848 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3957g00026 848 ProSiteProfiles Ubiquitin domain profile. 52 128 IPR000626 GO:0005515
Gabi3957g00026 848 Pfam Ubiquitin family 55 126 IPR000626 GO:0005515
Gabi3957g00026 848 FunFam E3 ubiquitin-protein ligase UPL5 732 847 - -
Gabi3957g00026 848 ProSiteProfiles HECT domain profile. 508 848 IPR000569 GO:0004842
Gabi3957g00026 848 SUPERFAMILY Hect, E3 ligase catalytic domain 483 833 IPR035983 GO:0004842
Gabi3957g00026 848 SMART hect_3 506 846 IPR000569 GO:0004842
Gabi3957g00026 848 SMART ubq_7 52 124 IPR000626 GO:0005515
Gabi3957g00026 848 Pfam HECT-domain (ubiquitin-transferase) 537 840 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3957g00026 Gabi-Chr3957 218002 223906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3957g00026 52 173 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 29.600 1.95e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3957g00026 - - gmx:100789233 1366.29