Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3957g00008 ATGAAGCTCGATAACACCAACGGCCAGATGTCCTTCGCCGGCGATGTTTCGCCACCGCAGAACGCGGATGACGTGGAGGAGATATTCGTGCCGCCGCTGAACTTCGCGATGGTCGACAATGGCATTTTTAGATCGGGCTTTCCCGATTCTGCCAACTTCGGATTCCTGAAATCCCTTCGTCTCCGTTCCGTAATATGTTTGTGCCCCGAACCGTATCCAGAAGCGACTTTGGAATTTTTGAAGGTCAACGGAATAAGGTTTTATCAATTCGGGATCGATGGCTGTAAGGAACCCTTTGTCAACATCCCAGAGGATACAATTCGTGAAGCTTTGAAAGTGGCCCTCGATGTTAGGAACCACCCCCTGCTGATCCACTGTAAACGAGGAAAACACCGCACTGGTTGTCTTGTGGGATGCATAAGAAGATTGCAGAGATGGTGTTTATCATCTGTTTTTGATGAGTACCAAAGGTTTGCAGGTGCCAAGGCCAGAGTGTCAGACCAGAGGTTCATCGAGTTGTTTGATATTTCTTGTTTGAAGCACCACCCACTCTCATTTTCAAGCTCAAAGAAATAG 576 0.4792 MKLDNTNGQMSFAGDVSPPQNADDVEEIFVPPLNFAMVDNGIFRSGFPDSANFGFLKSLRLRSVICLCPEPYPEATLEFLKVNGIRFYQFGIDGCKEPFVNIPEDTIREALKVALDVRNHPLLIHCKRGKHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGAKARVSDQRFIELFDISCLKHHPLSFSSSKK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3957g00008 191 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Gabi3957g00008 191 PRINTS Plant and fungal dual specificity phosphatase signature 66 79 IPR020428 GO:0016791
Gabi3957g00008 191 PRINTS Plant and fungal dual specificity phosphatase signature 85 99 IPR020428 GO:0016791
Gabi3957g00008 191 PRINTS Plant and fungal dual specificity phosphatase signature 29 46 IPR020428 GO:0016791
Gabi3957g00008 191 PRINTS Plant and fungal dual specificity phosphatase signature 102 116 IPR020428 GO:0016791
Gabi3957g00008 191 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3957g00008 191 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 29 176 IPR029021 -
Gabi3957g00008 191 Pfam Tyrosine phosphatase family 30 184 IPR004861 -
Gabi3957g00008 191 CDD PFA-DSP_Siw14 29 175 - -
Gabi3957g00008 191 Gene3D Protein tyrosine phosphatase superfamily 28 178 IPR029021 -
Gabi3957g00008 191 MobiDBLite consensus disorder prediction 1 16 - -
Gabi3957g00008 191 ProSiteProfiles Dual specificity protein phosphatase domain profile. 34 186 IPR020422 GO:0006470|GO:0008138
Gabi3957g00008 191 PANTHER TYROSINE-PROTEIN PHOSPHATASE 28 181 - -
Gabi3957g00008 191 FunFam probable tyrosine-protein phosphatase At1g05000 28 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3957g00008 Gabi-Chr3957 93364 96938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3957g00008 11 191 Protein tyrosine phosphatase (PTP) family AT4G03960 70.588 1.48e-97 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3957g00008 K18045 - gmx:100785520 358.607