Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3957g00007 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGGGGTTCCGTCGTTGATAGTTCAGCTTCAGTTTCAGCCTCAGCCTCAGCCTCAGCCTCAACGGCTAATGGTGGGGTTGAGTTGGATTCGTCGATCTTTTTGAAGAGAGCCCATGAGCTCAAAGAGGAAGGGAATAAGAGATTTCAGAATAAGGATTATGCGGGTGCTCTTGAACAGTATGAGAATGCTCTTCGATTAACCCCTAAAACACACCCTGATAGAGCTGTTTTTCACAGCAATAGGGCCGCTTGTTTGATGCAAATGAAGCCCATAGATTATGAAACTGTGATTGCTGAGTGCACCATGGCACTTCAGGTTCAGCCCCAGTTTGTCCGAGCCCTTCTTCGGAGGGCTCGGGCATTCGAGGCTGTAGGTAAATATGAAATGGCTGTGCAAGATGTGCAGGTCTTATTGGGAGCTGATCCTAATCACCGTGATGCTTTGGAGATTTCTCAGAGACTGAGGACTGCATTGGGACCTCGCCAGGAAGCCCAGCAGGACCTCCAGAGTCGCCCTTCCCCCGCTGCCCTTGGGGCTTCTGCTGTCCGTGGTGCCCCTATTGCTGGATTAGGCCCGTGTTTGCCGGCCCGGCCGGTTCCAAAGAAGGGGCCTAATTCAGCTGTTGGATCGGTTCTCTCACCTATTAATAACAAGCTAGACAAGTCCCAACCAGTTTTGCCAACCGAAAATGGTCCTGAGACAAGGTTCCACCTGCCAAAACTTGTGTTGAAGCCTTCAAATGGTTCTGCAGAGCCACCTAACCTGAAAAAAGAAAACCAAAAGGAACAGTCATCTCATTCCTCAACTGTTCGTGGGCAGCGTTCAGAGGTCGCAATTCGGTGGAGACCATTGAAGCTTGTTTATGATCATGACATTAGGCTCGCCCAGATGCCAGTGAATTGCAGTTTTAGAGTACTAAGAGATATAGTAAGCAAAAGATTTCCTTCGTCAAATGCAGTTCTGGTCAAGTATAAGGATGGTGATGGTGATTTGGTTACTATAACTTCTACTGATGAACTCAGATTGGCAGAGTCTAGTGTTGATAGCCATCTCTTAAAAGAACCTGAAGCAGATAAAAGTGATTCAGTTTCAATGCTGAGACTACATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTATTGGAAGAAGAGGAAGAGAAACCTGTTGAGAGTGAAGGGATCAAGGGAGATGAGAGTGGGTCACATTCTTCCCTCAGTGAATCTGTCTCTGAAGTTCCTGACACTGAGGTTGATAAGATAGAGAAGGATGCTCCAAAGGAAAAGCCGGGAGCCAAAGGAGATACTGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGATTTTGCTCAGCTTTTCCGCTCACATGTTGGAATTGATCCAGACGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCAGAGGCCCTTGAGGAAACAGTTACTAGTGAGGAGGCTCAGGTTCTATTTGACAAGGCTGCTTCAAAGTTCCAGGAGGTGGCCGCATTGGCATTCTTCAACTGGGGAAATGTTCACATGTGCGCTGCTAGGAAGCGGATCCCCCTAGATGAGTCAGCTGGGAAGGAGGTAGTGGCAGAACAGCTTCAAGTGGCAGAACAGCTTCAAGTGGCTTATGACTGGGTCAAGGAAAAATATTCTCTGGCAAGAGAAAAGTATGAGGAAGCACTCTTGATCAAACCAGACTTCTATGAGGGACTGTTAGCTCTGGGGCAGCAACAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATAGATCTATCAGGCTGGGATTCTACAGAGACACTTCAACTTTTTGATAGTGCAGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAGCTGGAGGAACAGAGAGCAAAAGAGCTAAAGGACCCAAATGCAACCAAGAAAGAAGAACTATTGAGAAGAAGAAAGAAACAGGGAGGTGCTACTGAAGGTGAGTCCTCCACTGTTGGCGGTCAAGGGGAAATATCCCCAGAAGAAGCTGCTGAACAAGCAGCTGTCATGAGATCGCAGATTCACCTCTTTTGGGGTAATATGCTTTTCGAAAGATCCCAAGTTGAATGCAAATTAGGAATGAGTGGTTGGAAGAAAAACCTGGATGCTGCAACTGAGCGCTTCAAGCTTGCTGGAGCTTCTGAGGCAGATATTTTTATGGTTCTAAAGAATCATTGCTCAAATGGAGATGCAAGAGAAGGAGATGATAAAAAGATTGAGAACCCACAACCCTATAAGACTGGTGAGCCAGAGATTAACAAGGCTAATCAAGTATGA 2352 0.4634 MGKSGGRRKKGGSVVDSSASVSASASASASTANGGVELDSSIFLKRAHELKEEGNKRFQNKDYAGALEQYENALRLTPKTHPDRAVFHSNRAACLMQMKPIDYETVIAECTMALQVQPQFVRALLRRARAFEAVGKYEMAVQDVQVLLGADPNHRDALEISQRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVPKKGPNSAVGSVLSPINNKLDKSQPVLPTENGPETRFHLPKLVLKPSNGSAEPPNLKKENQKEQSSHSSTVRGQRSEVAIRWRPLKLVYDHDIRLAQMPVNCSFRVLRDIVSKRFPSSNAVLVKYKDGDGDLVTITSTDELRLAESSVDSHLLKEPEADKSDSVSMLRLHIVEVSPEQEPPLLEEEEEKPVESEGIKGDESGSHSSLSESVSEVPDTEVDKIEKDAPKEKPGAKGDTECKEVEMDDWLFDFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQVLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSTETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKQGGATEGESSTVGGQGEISPEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKKNLDAATERFKLAGASEADIFMVLKNHCSNGDAREGDDKKIENPQPYKTGEPEINKANQV 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3957g00007 783 SMART tpr_5 85 120 IPR019734 GO:0005515
Gabi3957g00007 783 SMART tpr_5 47 80 IPR019734 GO:0005515
Gabi3957g00007 783 SMART tpr_5 121 154 IPR019734 GO:0005515
Gabi3957g00007 783 Gene3D - 293 363 - -
Gabi3957g00007 783 ProSiteProfiles PB1 domain profile. 291 383 IPR000270 GO:0005515
Gabi3957g00007 783 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3957g00007 783 PANTHER PROTEIN CLMP1 1 768 IPR044517 -
Gabi3957g00007 783 MobiDBLite consensus disorder prediction 754 783 - -
Gabi3957g00007 783 SMART PB1_new 291 383 IPR000270 GO:0005515
Gabi3957g00007 783 Pfam PB1 domain 291 382 IPR000270 GO:0005515
Gabi3957g00007 783 CDD PB1 294 363 - -
Gabi3957g00007 783 MobiDBLite consensus disorder prediction 643 669 - -
Gabi3957g00007 783 MobiDBLite consensus disorder prediction 643 689 - -
Gabi3957g00007 783 MobiDBLite consensus disorder prediction 384 447 - -
Gabi3957g00007 783 MobiDBLite consensus disorder prediction 219 239 - -
Gabi3957g00007 783 SUPERFAMILY CAD & PB1 domains 289 358 - -
Gabi3957g00007 783 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
Gabi3957g00007 783 SUPERFAMILY TPR-like 44 178 IPR011990 GO:0005515
Gabi3957g00007 783 Coils Coil 623 643 - -
Gabi3957g00007 783 MobiDBLite consensus disorder prediction 205 284 - -
Gabi3957g00007 783 Gene3D Tetratricopeptide repeat domain 44 176 IPR011990 GO:0005515
Gabi3957g00007 783 MobiDBLite consensus disorder prediction 423 447 - -
Gabi3957g00007 783 ProSiteProfiles TPR repeat profile. 121 154 IPR019734 GO:0005515
Gabi3957g00007 783 SUPERFAMILY TPR-like 497 599 IPR011990 GO:0005515
Gabi3957g00007 783 MobiDBLite consensus disorder prediction 754 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3957g00007 Gabi-Chr3957 87518 90565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3957g00007 44 168 Calmodulin-binding Proteins AT3G25230 28.676 5.23e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3957g00007 K26538 - gmx:100786963 1274.61