Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3957g00005 ATGGATGGTGTCGATGGAGGACCACGGAGGAGACGGACTCTCAAAGAACGCCTCAGATTCACCGGAATGGGGTGTTGTGGGGCCACCTGGGTTTTCCGTCCGGCCACCCTAAACGTCAGGAATGACCAAGATGAACAAGAAGGAAGAACACACTCACAGCAGATGCAGGAAACGAACACGGGTGCTCAAGATCCAAACCCAAATGGACCCGAATGTCTCGGCCCGACTCCCTCGGGTTCGGGTATGAATCTGGCGGCGGCGTTGGCGGCCGAGCGTCAATTAAGGGGAGCGCAGGAACCGGATGGGGGAGGCGAAGGATCCGCCGGGGAGACGAGGACGGCGCCGGGGACGCCGTGGAGGGTGTCGTTGATGAAGCTGTTGGAGGAAACGGAGGGTGGGGATGCGGAGGTGGCGGTGACGGAAACGGAAAGAGAGGGAGGAGAAGGGGCAGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGAAAGAAAGGCGCAGCGTTCATCCCATGTGGTCACACTTATTGCAGGGTGTGTTCGAGGGAGCTGTGGTTGAATCGAGGGAGTTGTCCCCTCTGCAATCGTTCCATTCTCGACATTCTCGACATCTTCTGA 618 0.5858 MDGVDGGPRRRRTLKERLRFTGMGCCGATWVFRPATLNVRNDQDEQEGRTHSQQMQETNTGAQDPNPNGPECLGPTPSGSGMNLAAALAAERQLRGAQEPDGGGEGSAGETRTAPGTPWRVSLMKLLEETEGGDAEVAVTETEREGGEGAVGNDSVCCVCMGRKKGAAFIPCGHTYCRVCSRELWLNRGSCPLCNRSILDILDIF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3957g00005 205 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Gabi3957g00005 205 MobiDBLite consensus disorder prediction 38 82 - -
Gabi3957g00005 205 SMART ring_2 157 194 IPR001841 -
Gabi3957g00005 205 MobiDBLite consensus disorder prediction 96 117 - -
Gabi3957g00005 205 Pfam Zinc finger, C3HC4 type (RING finger) 154 199 - -
Gabi3957g00005 205 PANTHER OS01G0917900 PROTEIN 9 205 - -
Gabi3957g00005 205 SUPERFAMILY RING/U-box 152 201 - -
Gabi3957g00005 205 MobiDBLite consensus disorder prediction 52 66 - -
Gabi3957g00005 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 204 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3957g00005 Gabi-Chr3957 70357 71418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3957g00005 9 205 C3H Transcription Factor Family AT4G22250 52.261 5.77e-56 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3957g00005 - - pcin:129286609 261.536