Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3957g00004 ATGAGTCAACTCGGTGTGATATTACAGGAATCGCTCCGCGCTGAAAGAGAAGCCAGAACCATTCTGGGTTTGTTAACGGAGCAAATGGATGGTGTCGATGGAGGACCACGGAGGAGACGGACTCTCAAAGAACGCCTCAGATTCACCGGAATGGGGTGTTGTGGGGCCACCTGGGTTTTCCGTCCGGCCACCCTAAACGTCAGGAATGACCAAGATGAACAAGAAGGAAGAACACACTCACAGCAGATGCAGGAAACGAACACGGGTGCTCAAGATCCAAACCCAAATGGACCCGAATGTCTCGGCCCGACTCCCTCGGGTTCGGGTATGAATCTGGCGGCGGCGTTGGCGGCCGAGCGTCAATTAAGGGGAGCGCAGGAACCGGATGGGGGAGGCGAAGGATCCGCCGGGGAGACGAGGACGGCGCCGGGGACGCCGTGGAGGGTGTCGTTGATGAAGCTGTTGGAGGAAACGGAGGGTGGGGATGCGGAGGTGGCGGTGACGGAAACGGAAAGAGAGGGAGGAGAAGGGGCAGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGAAAGAAAGGCGCAGCGTTCATCCCATGTGGTCACACTTATTGCAGGGTGTGTTCGAGGGAGCTGTGGTTGAATCGAGGGAGTTGTCCCCTCTGCAATCGTTCCATTCTCGACATTCTCGACATCTTCTGA 702 0.5726 MSQLGVILQESLRAEREARTILGLLTEQMDGVDGGPRRRRTLKERLRFTGMGCCGATWVFRPATLNVRNDQDEQEGRTHSQQMQETNTGAQDPNPNGPECLGPTPSGSGMNLAAALAAERQLRGAQEPDGGGEGSAGETRTAPGTPWRVSLMKLLEETEGGDAEVAVTETEREGGEGAVGNDSVCCVCMGRKKGAAFIPCGHTYCRVCSRELWLNRGSCPLCNRSILDILDIF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3957g00004 233 SMART ring_2 185 222 IPR001841 -
Gabi3957g00004 233 MobiDBLite consensus disorder prediction 124 145 - -
Gabi3957g00004 233 MobiDBLite consensus disorder prediction 66 110 - -
Gabi3957g00004 233 ProSiteProfiles Zinc finger RING-type profile. 185 223 IPR001841 -
Gabi3957g00004 233 SUPERFAMILY RING/U-box 180 229 - -
Gabi3957g00004 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 232 IPR013083 -
Gabi3957g00004 233 PANTHER OS01G0917900 PROTEIN 5 233 - -
Gabi3957g00004 233 Pfam Zinc finger, C3HC4 type (RING finger) 182 227 - -
Gabi3957g00004 233 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3957g00004 Gabi-Chr3957 70347 71418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3957g00004 21 233 C3H Transcription Factor Family AT4G22250 51.628 6.48e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3957g00004 - - gmx:106799504 304.293