Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00054 ATGGCACTTTCTATGCACAAGGACTCATCCAACAATCAAATGGATTCAAGCAAGTATGTGAGGTATACACCAGAACAAGTGGAAGCTTTGGAAAGGGTATATGCAGAATGCCCAAAGCCTAGTTCTTTGAGGAGACAGCAACTCATCAGGGAGTGCCCCATCCTTTCTAATATTGAACCAAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAGTTGTTGATGGAAGAGAATGACCGTCTGCAGAAGCAAGTCTCACATCTTGTTTATGAAAATGGATATATGAAGCAACAGATACATACTGCATCTGCTGCTACTACTACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAACCAACAGCAAAACCCAACACCTCAGCATCCCCAGAGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTTGTGAGTCTAGAGCCCACAAAGGTTGCCGAGATTCTTAAAGATCGGTCGTCATGGTATCGTGACTGCCGGTGCCTCGAAGTGTTGAGTATAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCCCCTACAACATTGGCAGCAGCCCGTGACTTCTTTACACTAAGATACACTACGAGTTTAGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGACTTCTTCAACTGGTGGCCCCACTGGCCCTCCTCCTTCAAACTTCGTGAGAGCTGAATTGCTTCCCAGTGGTTATCTAATTAGACCATGCGAGGGTGGTGGATCCATTATTAATATTGTTGATCACATTGATTTAGATGTCTGGAGTGTCCCTGAAGTACTGAGGCCCCTTTATGAATCATCAAAAATCTTGGCTCAGAAATTGACTATTGCTGCCATGCAACATATAAGACAGATAGCCCAAGAATCAAGTGGAGAAATTCAGTATGGTGGGGGACGCCAACCTGCTGTGTTGAGGACATTTAGTCAAAGACTTTGCAGGGGGTTCAATGATGCTGTGAATGGGTTTGTGGATGATGGTTGGTCACTGATGAGTAATGATGGGGTGGAAGATGTGACTATAGCCATAAACTCATCTCCCAACAAATTTTTGGGGTCCCATTACAATTCCTCAATGTTTCCAGCATTTGGAGGTGGGGTCCTATGTGCCAAGGCATCAATGCTACTGCAGGATGTTCCTCCTGCGTTACTGGTTCGATTTTTGAGGGAGCATCGATCAGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATCTCTGAAGGCTAGTCCATATGCAGTTCCTTGTGCAAGACCTGGTGGTTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCTCATACTATTGAGCACGAGGAGTTCCTGGAGGTAGTTCGCATAGAGGGTCATGCATTTTCCCCTGAAGACATGGCATTGGCGCGTGACATGTATCTGTTGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGGGCGTGTGCTCAACTTGTGTTTGCACCTATCGATGAATCATTTGCTGATGATGCTCTTTTACTGCCTTCTGGTTTTCGCGTCATTCCATTGGATCCTAAAACAGTTAAGTGCCAATTATCAACAACTTCTGCAACTAGGACATTGGATTTGGCATCAACGCTTGAAGTAGGATCTGGAAATGCTCGTCCAGCTGGTGAAGCTGATTTGAATGGTTACAACCTTAGGTCGGTCCTTACCATTGCATTCCAATTTACCTTTGAGAACCATTTGCGGGACAATGTGGCTGCCATGGCTCGCCAGTATGTGCGTAGTGTTGTTGGATCTGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCTCGGCTCAATAACCAACTGGGGCCAAAGTCACTTCCTGGTTCACCAGAGGCTCTTACTTTATCACGATGGATCTGTAGAAGCTACAGGATCCACACTGGTGCAGAGCTTTTTAGAGTTGAGTCTACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCATCATTCAGATGCAATCATGTGTTGTTCTGTGAAAACAACTGCATCTCCAGTGTTCACCTTTGCAAACCAGGCTGGACTAGACATGCTTGAAACTACTCTGGTTGCCCTTCAGGATATAATGCTCGATAGGGTTCTTGATGAAGCTGGCAGGAAGATTCTTTGCTCTGAGTTTTCCAAGATAATGCAACAGGGATTTGCATATCTGCCTGCAGGGATATGTGTATCCAGTATGAATCGGCCAGTGTCTTATGAGCAAGCCATTGCATGGAAAGTTCTCAATGATGAGGATTCCAATCACTGCTTGGCCTTCATGTTCGTGAACTGGTCTTTTGTCTGA 2556 0.4617 MALSMHKDSSNNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASAATTTDNSCESVVMSGQNQQQNPTPQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRSSWYRDCRCLEVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFFTLRYTTSLEDGSLVICERSLTSSTGGPTGPPPSNFVRAELLPSGYLIRPCEGGGSIINIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAAMQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMSNDGVEDVTIAINSSPNKFLGSHYNSSMFPAFGGGVLCAKASMLLQDVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDMALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTVKCQLSTTSATRTLDLASTLEVGSGNARPAGEADLNGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLNNQLGPKSLPGSPEALTLSRWICRSYRIHTGAELFRVESTAGDAILKQLWHHSDAIMCCSVKTTASPVFTFANQAGLDMLETTLVALQDIMLDRVLDEAGRKILCSEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDEDSNHCLAFMFVNWSFV 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00054 851 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3947g00054 851 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Gabi3947g00054 851 Pfam MEKHLA domain 706 850 IPR013978 -
Gabi3947g00054 851 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Gabi3947g00054 851 CDD homeodomain 18 78 IPR001356 GO:0003677
Gabi3947g00054 851 MobiDBLite consensus disorder prediction 133 159 - -
Gabi3947g00054 851 Gene3D - 200 383 IPR023393 -
Gabi3947g00054 851 SUPERFAMILY Bet v1-like 414 606 - -
Gabi3947g00054 851 Coils Coil 87 107 - -
Gabi3947g00054 851 CDD bZIP 70 109 - -
Gabi3947g00054 851 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Gabi3947g00054 851 SMART HOX_1 15 81 IPR001356 GO:0003677
Gabi3947g00054 851 Pfam START domain 167 374 IPR002913 GO:0008289
Gabi3947g00054 851 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Gabi3947g00054 851 MobiDBLite consensus disorder prediction 133 157 - -
Gabi3947g00054 851 Gene3D - 9 84 - -
Gabi3947g00054 851 SUPERFAMILY Bet v1-like 167 378 - -
Gabi3947g00054 851 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 851 IPR044830 GO:0003700
Gabi3947g00054 851 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Gabi3947g00054 851 SMART START_1 166 376 IPR002913 GO:0008289
Gabi3947g00054 851 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00054 Gabi-Chr3947 668847 674499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00054 5 851 Homeobox Transcription Factor Family AT2G34710 79.976 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3947g00054 START 2.2e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00054 K09338 - gmx:100779499 1582