Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00053 ATGGCACTTTCTATGCACAAGGACTCATCCAACAATCAAATGGATTCAAGCAAGTATGTGAGGTATACACCAGAACAAGTGGAAGCTTTGGAAAGGGTATATGCAGAATGCCCAAAGCCTAGTTCTTTGAGGAGACAGCAACTCATCAGGGAGTGCCCCATCCTTTCTAATATTGAACCAAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAGTTGTTGATGGAAGAGAATGACCGTCTGCAGAAGCAAGTCTCACATCTTGTTTATGAAAATGGATATATGAAGCAACAGATACATACTGTAACCCCCTTATTTCCTACTACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAACCAACAGCAAAACCCAACACCTCAGCATCCCCAGAGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTTGTGAGTCTAGAGCCCACAAAGGTTGCCGAGATTCTTAAAGATCGGTCGTCATGGTATCGTGACTGCCGGTGCCTCGAAGTGTTGAGTATAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCCCCTACAACATTGGCAGCAGCCCGTGACTTCTTTACACTAAGATACACTACGAGTTTAGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGACTTCTTCAACTGGTGGCCCCACTGGCCCTCCTCCTTCAAACTTCGTGAGAGCTGAATTGCTTCCCAGTGGTTATCTAATTAGACCATGCGAGGGTGGTGGATCCATTATTAATATTGTTGATCACATTGATTTAGATGTCTGGAGTGTCCCTGAAGTACTGAGGCCCCTTTATGAATCATCAAAAATCTTGGCTCAGAAATTGACTATTGCTGCCATGCAACATATAAGACAGATAGCCCAAGAATCAAGTGGAGAAATTCAGTATGGTGGGGGACGCCAACCTGCTGTGTTGAGGACATTTAGTCAAAGACTTTGCAGGGGGTTCAATGATGCTGTGAATGGGTTTGTGGATGATGGTTGGTCACTGATGAGTAATGATGGGGTGGAAGATGTGACTATAGCCATAAACTCATCTCCCAACAAATTTTTGGGGTCCCATTACAATTCCTCAATGTTTCCAGCATTTGGAGGTGGGGTCCTATGTGCCAAGGCATCAATGCTACTGCAGGATGTTCCTCCTGCGTTACTGGTTCGATTTTTGAGGGAGCATCGATCAGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATCTCTGAAGGCTAGTCCATATGCAGTTCCTTGTGCAAGACCTGGTGGTTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCTCATACTATTGAGCACGAGGAGTTCCTGGAGGTAGTTCGCATAGAGGGTCATGCATTTTCCCCTGAAGACATGGCATTGGCGCGTGACATGTATCTGTTGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGGGCGTGTGCTCAACTTGTGTTTGCACCTATCGATGAATCATTTGCTGATGATGCTCTTTTACTGCCTTCTGGTTTTCGCGTCATTCCATTGGATCCTAAAACAGATGGTCCAGCTGCAACTAGGACATTGGATTTGGCATCAACGCTTGAAGTAGGATCTGGAAATGCTCGTCCAGCTGGTGAAGCTGATTTGAATGGTTACAACCTTAGGTCGGTCCTTACCATTGCATTCCAATTTACCTTTGAGAACCATTTGCGGGACAATGTGGCTGCCATGGCTCGCCAGTATGTGCGTAGTGTTGTTGGATCTGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCTCGGCTCAATAACCAACTGGGGCCAAAGTCACTTCCTGGTTCACCAGAGGCTCTTACTTTATCACGATGGATCTGTAGAAGCTACAGGATCCACACTGGTGCAGAGCTTTTTAGAGTTGAGTCTACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCATCATTCAGATGCAATCATGTGTTGTTCTGTGAAAACAACTGCATCTCCAGTGTTCACCTTTGCAAACCAGGCTGGACTAGACATGCTTGAAACTACTCTGGTTGCCCTTCAGGATATAATGCTCGATAGGGTTCTTGATGAAGCTGGCAGGAAGATTCTTTGCTCTGAGTTTTCCAAGATAATGCAACAGGGATTTGCATATCTGCCTGCAGGGATATGTGTATCCAGTATGAATCGGCCAGTGTCTTATGAGCAAGCCATTGCATGGAAAGTTCTCAATGATGAGGATTCCAATCACTGCTTGGCCTTCATGTTCGTGAACTGGTCTTTTGTCTGA 2544 0.4631 MALSMHKDSSNNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTVTPLFPTTDNSCESVVMSGQNQQQNPTPQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRSSWYRDCRCLEVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFFTLRYTTSLEDGSLVICERSLTSSTGGPTGPPPSNFVRAELLPSGYLIRPCEGGGSIINIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAAMQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMSNDGVEDVTIAINSSPNKFLGSHYNSSMFPAFGGGVLCAKASMLLQDVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDMALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTDGPAATRTLDLASTLEVGSGNARPAGEADLNGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLNNQLGPKSLPGSPEALTLSRWICRSYRIHTGAELFRVESTAGDAILKQLWHHSDAIMCCSVKTTASPVFTFANQAGLDMLETTLVALQDIMLDRVLDEAGRKILCSEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDEDSNHCLAFMFVNWSFV 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00053 847 Gene3D - 9 84 - -
Gabi3947g00053 847 SUPERFAMILY Bet v1-like 415 602 - -
Gabi3947g00053 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 847 IPR044830 GO:0003700
Gabi3947g00053 847 Pfam MEKHLA domain 702 846 IPR013978 -
Gabi3947g00053 847 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3947g00053 847 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Gabi3947g00053 847 CDD START_ArGLABRA2_like 162 378 - -
Gabi3947g00053 847 CDD homeodomain 18 78 IPR001356 GO:0003677
Gabi3947g00053 847 SMART START_1 167 377 IPR002913 GO:0008289
Gabi3947g00053 847 Coils Coil 87 107 - -
Gabi3947g00053 847 CDD bZIP 70 109 - -
Gabi3947g00053 847 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Gabi3947g00053 847 Pfam START domain 168 375 IPR002913 GO:0008289
Gabi3947g00053 847 ProSiteProfiles START domain profile. 158 359 IPR002913 GO:0008289
Gabi3947g00053 847 SMART HOX_1 15 81 IPR001356 GO:0003677
Gabi3947g00053 847 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Gabi3947g00053 847 SUPERFAMILY Bet v1-like 168 379 - -
Gabi3947g00053 847 Gene3D - 201 384 IPR023393 -
Gabi3947g00053 847 MobiDBLite consensus disorder prediction 139 158 - -
Gabi3947g00053 847 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Gabi3947g00053 847 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00053 Gabi-Chr3947 668847 674499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00053 5 847 Homeobox Transcription Factor Family AT2G34710 79.103 0.0 1391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3947g00053 START 2.2e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00053 K09338 - gmx:100779499 1585.08