Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00050 ATGACTTCTTCTACTCATGAACTCACAGATAATGAAGCTGATGGGCAGCAGCAGTCAGAATCACAGATGCAGGAGCCTTTATCTGCAAATGGAATTTCTCAAGCAGGTATCGGTACTCAGAATATTCAGTATGCAACACCTCCACAGCTTGGAACTGGGCATGCTATGGCACCAGCTGCTTATCCATATCCAGATCCGTACTATGGAAGCATCTTTGCTCCCTATGATGCACAACCTTATCCCCCACAACACTATGGTGGACATCCAATGGTCCATCTTCAATTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGAAGGCAGTCCCGTGCGAAAGCTGAATCAGAAAAAAAAGCTACAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGAAGAGCAAGGGGATGTGGAGGTCGTTTTCTGAATTCAAAGAATAATGAGAATCAACAGAACGAGGTTTCATCAACTGAAAACTCACAGTCCAATATCAATCTCAATTCTGATAAAAATGATCTTGCACCATCAGATAGAACATCCTAA 621 0.4251 MTSSTHELTDNEADGQQQSESQMQEPLSANGISQAGIGTQNIQYATPPQLGTGHAMAPAAYPYPDPYYGSIFAPYDAQPYPPQHYGGHPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKATRNRKPYLHESRHLHALRRARGCGGRFLNSKNNENQQNEVSSTENSQSNINLNSDKNDLAPSDRTS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00050 206 Gene3D - 110 171 - -
Gabi3947g00050 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Gabi3947g00050 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Gabi3947g00050 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Gabi3947g00050 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 198 IPR001289 GO:0003700|GO:0006355
Gabi3947g00050 206 MobiDBLite consensus disorder prediction 168 200 - -
Gabi3947g00050 206 MobiDBLite consensus disorder prediction 128 144 - -
Gabi3947g00050 206 MobiDBLite consensus disorder prediction 1 29 - -
Gabi3947g00050 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Gabi3947g00050 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Gabi3947g00050 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Gabi3947g00050 206 MobiDBLite consensus disorder prediction 127 206 - -
Gabi3947g00050 206 MobiDBLite consensus disorder prediction 145 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00050 Gabi-Chr3947 631556 637261 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00050 1 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.769 1.21e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi3947g00050 CBFB_NFYA 6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00050 K08064 - gmx:100809036 359.762