Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00043 ATGTTTGAGTCGCTTGCTAACCTTCCGGCGACACTTTCCGGTCACTATCTCCGGCCACCGCCGCAGGACCGGCCAACAGTTGGTGGAGGAAGTGTTGTCCCTAGCACAAGGCCTAATCCAGCTAGGAGTCACACCAGTGATTGGTATCTGGAGTGGTTATTAGCCATTGCATATGTTGGAGGGATAGCTGCTCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAGATTAGCAATGACTGCAGTGAGGCCAGTGATGTTAGTGACTGATGAGAGCTGCTATACGTGGTGCTTAAAACTCCAGAAAAATGATATTCCATCTCTGAGGTGGCTTATTTTGTTGGATTCCCCTTCCTTAAATTTTACAAAGAAGTGGAATGTGTTAACCCCGGAAATGATTAAGAGGCATCCTGTAAAGCCTCTATCATTTAATTACTCCTGGGCATCTGAAGGAGCTGTCATAATATGCTTTACATCAGGAACTACGGGAAAGCCTAAGGGAGTCACCCTAAGCCATGGAGCTTTGATCACACAATCCCTAGCCAAGATTGCCGTAGTTGGGTACAGTGAGGATGATGTCTATCTGCATACTGCTCCATTATGCCATATTGGTGGCTTGTCATCAGCCATGGCCATGCTTATGGTTGGTGGTTGCCATGTCTTGTTGCCAAAGTTTGATGCAAACTCAGCTGTTGGTGCCATACAGCAATTTTCCGTGACATCTTTTATAACAGTTCCTGCAATAATGGCCAGTCTGATTTCTGTAATTAGGCACAAACAGACCTGGAAAGGCGGAGAAACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTCATCAAGGACACTAGCATATTCTTCCATAAAGCCAAGCTTATTTCAGCTTATGGGATGACAGAGACATGCTCTTCATTGACATTCCTAACACTCTATGATCCAATGCATGAAACCACAAGCCATCCCCTTCAAATATTTGGTGTGGCAGGATCCAATATAATTCACCAGCCACAAGGTGTTTGTGTTGGCAAGGCTGCACCCCATGTAGAACTGAAGATATGTGCAGATGCCTCTGGTCACATTGGGAGAATTTTAACTAGAGGACCACATACAATGCTCAGGTATTGGGATCAAATCCTCACAAACCCATTAAATCAGAGGAATGAAGTATGGTTTGACACAGGTGACATTGGATCTATTGACTGTTATGGCAATTTGTGGCTCCTTGGACGAACAAATGGTCGTATCAAGAGTGGTGGGGAGAATATTTACCCTGAAGAGGTTGAGGCAATTCTACGAGAACATCCAGGGATTGCTAGTGTTGTTGTTGTGGGAATCCCAGATGCTTACCTGACAGAGATGGTGGCAGCATGTATCCAACTAGGAGAAAATTGGCAATGGTCAGAGCAATCAGCTTCAAATGAAGAGTTTCACCTATCTAGAAAGAATCTCCAGCAATATTGCATGGAAAATAATTTAAGCAGGTTTAAGATACCGAAAATATTTATTGTATGGAAGAAGCCTTTTCCACTCACTACCACAGGAAAAATAAGAAGAGACCAAGTTGGAAAGGAAGTTATGTCTCATTTACAATCTTTGCATAGTAATCTTTGA 1620 0.4364 MFESLANLPATLSGHYLRPPPQDRPTVGGGSVVPSTRPNPARSHTSDWYLEWLLAIAYVGGIAAPLNYRWSFEEARLAMTAVRPVMLVTDESCYTWCLKLQKNDIPSLRWLILLDSPSLNFTKKWNVLTPEMIKRHPVKPLSFNYSWASEGAVIICFTSGTTGKPKGVTLSHGALITQSLAKIAVVGYSEDDVYLHTAPLCHIGGLSSAMAMLMVGGCHVLLPKFDANSAVGAIQQFSVTSFITVPAIMASLISVIRHKQTWKGGETVKKILNGGGSLSLELIKDTSIFFHKAKLISAYGMTETCSSLTFLTLYDPMHETTSHPLQIFGVAGSNIIHQPQGVCVGKAAPHVELKICADASGHIGRILTRGPHTMLRYWDQILTNPLNQRNEVWFDTGDIGSIDCYGNLWLLGRTNGRIKSGGENIYPEEVEAILREHPGIASVVVVGIPDAYLTEMVAACIQLGENWQWSEQSASNEEFHLSRKNLQQYCMENNLSRFKIPKIFIVWKKPFPLTTTGKIRRDQVGKEVMSHLQSLHSNL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00043 539 ProSitePatterns Putative AMP-binding domain signature. 155 166 IPR020845 -
Gabi3947g00043 539 CDD AFD_class_I 155 520 - -
Gabi3947g00043 539 MobiDBLite consensus disorder prediction 13 43 - -
Gabi3947g00043 539 Gene3D - 41 413 IPR042099 -
Gabi3947g00043 539 SUPERFAMILY Acetyl-CoA synthetase-like 44 531 - -
Gabi3947g00043 539 Gene3D - 416 531 IPR045851 -
Gabi3947g00043 539 PANTHER ACYL-COA SYNTHETASE 43 527 - -
Gabi3947g00043 539 Pfam AMP-binding enzyme 45 420 IPR000873 -
Gabi3947g00043 539 Pfam AMP-binding enzyme C-terminal domain 429 518 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00043 Gabi-Chr3947 589700 596625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00043 155 534 Monolignol Biosynthesis Gene Families AT4G19010 27.595 5.42e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00043 K14760 - gmx:100809925 858.211