Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00042 ATGGCTAACTACTCCAACCCTCATATCTGCCAATGTTTGAGTCGCTTGCTAACCTTCCGGCGACACTTTCCGGTCACTATCTCCGGCCACCGCCGCAGGACCGGCCAACAGTTGGTGGAGGAAGTGTTGTCCCTAGCACAAGGCCTAATCCAGCTAGGAGTCACACCAGGTGACGTGGTCGCCATCTCTGCTTACAATAGTGATTGGTATCTGGAGTGGTTATTAGCCATTGCATATGTTGGAGGGATAGCTGCTCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAGATTAGCAATGACTGCAGTGAGGCCAGTGATGTTAGTGACTGATGAGAGCTGCTATACGTGGTGCTTAAAACTCCAGAAAAATGATATTCCATCTCTGAGGTGGCTTATTTTGTTGGATTCCCCTTCCTTAAATTTTACAAAGAAGTGGAATGTGTTAACCCCGGAAATGATTAAGAGGCATCCTGTAAAGCCTCTATCATTTAATTACTCCTGGGCATCTGAAGGAGCTGTCATAATATGCTTTACATCAGGAACTACGGGAAAGCCTAAGGGAGTCACCCTAAGCCATGGAGCTTTGATCACACAATCCCTAGCCAAGATTGCCGTAGTTGGGTACAGTGAGGATGATGTCTATCTGCATACTGCTCCATTATGCCATATTGGTGGCTTGTCATCAGCCATGGCCATGCTTATGGTTGGTGGTTGCCATGTCTTGTTGCCAAAGTTTGATGCAAACTCAGCTGTTGGTGCCATACAGCAATTTTCCGTGACATCTTTTATAACAGTTCCTGCAATAATGGCCAGTCTGATTTCTGTAATTAGGCACAAACAGACCTGGAAAGGCGGAGAAACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTCATCAAGGACACTAGCATATTCTTCCATAAAGCCAAGCTTATTTCAGCTTATGGGATGACAGAGACATGCTCTTCATTGACATTCCTAACACTCTATGATCCAATGCATGAAACCACAAGCCATCCCCTTCAAATATTTGGTGTGGCAGGATCCAATATAATTCACCAGCCACAAGGTGTTTGTGTTGGCAAGGCTGCACCCCATGTAGAACTGAAGATATGTGCAGATGCCTCTGGTCACATTGGGAGAATTTTAACTAGAGGACCACATACAATGCTCAGGTATTGGGATCAAATCCTCACAAACCCATTAAATCAGAGGAATGAAGTATGGTTTGACACAGGTGACATTGGATCTATTGACTGTTATGGCAATTTGTGGCTCCTTGGACGAACAAATGGTCGTATCAAGAGTGGTGGGGAGAATATTTACCCTGAAGAGGTTGAGGCAATTCTACGAGAACATCCAGGGATTGCTAGTGTTGTTGTTGTGGGAATCCCAGATGCTTACCTGACAGAGATGGTGGCAGCATGTATCCAACTAGGAGAAAATTGGCAATGGTCAGAGCAATCAGCTTCAAATGAAGAGTTTCACCTATCTAGAAAGAATCTCCAGCAATATTGCATGGAAAATAATTTAAGCAGGTTTAAGATACCGAAAATATTTATTGTATGGAAGAAGCCTTTTCCACTCACTACCACAGGAAAAATAAGAAGAGACCAAGTTGGAAAGGAAGTTATGTCTCATTTACAATCTTTGCATAGTAATCTTTGA 1683 0.4385 MANYSNPHICQCLSRLLTFRRHFPVTISGHRRRTGQQLVEEVLSLAQGLIQLGVTPGDVVAISAYNSDWYLEWLLAIAYVGGIAAPLNYRWSFEEARLAMTAVRPVMLVTDESCYTWCLKLQKNDIPSLRWLILLDSPSLNFTKKWNVLTPEMIKRHPVKPLSFNYSWASEGAVIICFTSGTTGKPKGVTLSHGALITQSLAKIAVVGYSEDDVYLHTAPLCHIGGLSSAMAMLMVGGCHVLLPKFDANSAVGAIQQFSVTSFITVPAIMASLISVIRHKQTWKGGETVKKILNGGGSLSLELIKDTSIFFHKAKLISAYGMTETCSSLTFLTLYDPMHETTSHPLQIFGVAGSNIIHQPQGVCVGKAAPHVELKICADASGHIGRILTRGPHTMLRYWDQILTNPLNQRNEVWFDTGDIGSIDCYGNLWLLGRTNGRIKSGGENIYPEEVEAILREHPGIASVVVVGIPDAYLTEMVAACIQLGENWQWSEQSASNEEFHLSRKNLQQYCMENNLSRFKIPKIFIVWKKPFPLTTTGKIRRDQVGKEVMSHLQSLHSNL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00042 560 PANTHER ACYL-COA SYNTHETASE 5 548 - -
Gabi3947g00042 560 ProSitePatterns Putative AMP-binding domain signature. 176 187 IPR020845 -
Gabi3947g00042 560 Gene3D - 437 552 IPR045851 -
Gabi3947g00042 560 Gene3D - 3 434 IPR042099 -
Gabi3947g00042 560 CDD AFD_class_I 176 541 - -
Gabi3947g00042 560 Pfam AMP-binding enzyme 26 441 IPR000873 -
Gabi3947g00042 560 SUPERFAMILY Acetyl-CoA synthetase-like 8 552 - -
Gabi3947g00042 560 Pfam AMP-binding enzyme C-terminal domain 450 539 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00042 Gabi-Chr3947 589700 596670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00042 42 555 Monolignol Biosynthesis Gene Families AT4G19010 26.345 4.55e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00042 K14760 - gmx:100809925 962.6