Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00041 ATGGCTAACTACTCCAACCCTCATATCTGCCAATGTTTGAGTCGCTTGCTAACCTTCCGGCGACACTTTCCGGTCACTATCTCCGGCCACCGCCGCAGGACCGGCCAACAGTTGGTGGAGGAAGTGTTGTCCCTAGCACAAGGCCTAATCCAGCTAGGAGTCACACCAGGTGACGTGGTCGCCATCTCTGCTTACAATAGTGATTGGTATCTGGAGTGGTTATTAGCCATTGCATATGTTGGAGGGATAGCTGCTCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAGATTAGCAATGACTGCAGTGAGGCCAGTGATGTTAGTGACTGATGAGAGCTGCTATACGTGGTGCTTAAAACTCCAGAAAAATGATATTCCATCTCTGAGGTGGCTTATTTTGTTGGATTCCCCTTCCTTAAATTTTACAAAGAAGTGGAATGTGTTAACCCCGGAAATGATTAAGAGGCATCCTGTAAAGCCTCTATCATTTAATTACTCCTGGGCATCTGAAGGAGCTGTCATAATATGCTTTACATCAGGAACTACGGGAAAGCCTAAGGGAGTCACCCTAAGCCATGGAGCTTTGATCACACAATCCCTAGCCAAGATTGCCGTAGTTGGGTACAGTGAGGATGATGTCTATCTGCATACTGCTCCATTATGCCATATTGGTGGCTTGTCATCAGCCATGGCCATGCTTATGGTTGGTGGTTGCCATGTCTTGTTGCCAAAGTTTGATGCAAACTCAGCTGTTGGTGCCATACAGCAATTTTCCGTGACATCTTTTATAACAGTTCCTGCAATAATGGCCAGTCTGATTTCTGTAATTAGGCACAAACAGACCTGGAAAGGCGGAGAAACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTCATCAAGGACACTAGCATATTCTTCCATAAAGCCAAGCTTATTTCAGCTTATGGATCCAATATAATTCACCAGCCACAAGGTGTTTGTGTTGGCAAGGCTGCACCCCATGTAGAACTGAAGATATGTGCAGATGCCTCTGGTCACATTGGGAGAATTTTAACTAGAGGACCACATACAATGCTCAGGTATTGGGATCAAATCCTCACAAACCCATTAAATCAGAGGAATGAAGTATGGTTTGACACAGGTGACATTGGATCTATTGACTGTTATGGCAATTTGTGGCTCCTTGGACGAACAAATGGTCGTATCAAGAGTGGTGGGGAGAATATTTACCCTGAAGAGGTTGAGGCAATTCTACGAGAACATCCAGGGATTGCTAGTGTTGTTGTTGTGGGAATCCCAGATGCTTACCTGACAGAGATGGTGGCAGCATGTATCCAACTAGGAGAAAATTGGCAATGGTCAGAGCAATCAGCTTCAAATGAAGAGTTTCACCTATCTAGAAAGAATCTCCAGCAATATTGCATGGAAAATAATTTAAGCAGGTTTAAGATACCGAAAATATTTATTGTATGGAAGAAGCCTTTTCCACTCACTACCACAGGAAAAATAAGAAGAGACCAAGTTGGAAAGGAAGTTATGTCTCATTTACAATCTTTGCATAGTAATCTTTGA 1587 0.4386 MANYSNPHICQCLSRLLTFRRHFPVTISGHRRRTGQQLVEEVLSLAQGLIQLGVTPGDVVAISAYNSDWYLEWLLAIAYVGGIAAPLNYRWSFEEARLAMTAVRPVMLVTDESCYTWCLKLQKNDIPSLRWLILLDSPSLNFTKKWNVLTPEMIKRHPVKPLSFNYSWASEGAVIICFTSGTTGKPKGVTLSHGALITQSLAKIAVVGYSEDDVYLHTAPLCHIGGLSSAMAMLMVGGCHVLLPKFDANSAVGAIQQFSVTSFITVPAIMASLISVIRHKQTWKGGETVKKILNGGGSLSLELIKDTSIFFHKAKLISAYGSNIIHQPQGVCVGKAAPHVELKICADASGHIGRILTRGPHTMLRYWDQILTNPLNQRNEVWFDTGDIGSIDCYGNLWLLGRTNGRIKSGGENIYPEEVEAILREHPGIASVVVVGIPDAYLTEMVAACIQLGENWQWSEQSASNEEFHLSRKNLQQYCMENNLSRFKIPKIFIVWKKPFPLTTTGKIRRDQVGKEVMSHLQSLHSNL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00041 528 Gene3D - 3 402 IPR042099 -
Gabi3947g00041 528 ProSitePatterns Putative AMP-binding domain signature. 176 187 IPR020845 -
Gabi3947g00041 528 Gene3D - 405 520 IPR045851 -
Gabi3947g00041 528 SUPERFAMILY Acetyl-CoA synthetase-like 8 520 - -
Gabi3947g00041 528 CDD AFD_class_I 176 509 - -
Gabi3947g00041 528 PANTHER ACYL-COA SYNTHETASE 5 516 - -
Gabi3947g00041 528 Pfam AMP-binding enzyme 26 409 IPR000873 -
Gabi3947g00041 528 Pfam AMP-binding enzyme C-terminal domain 418 507 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00041 Gabi-Chr3947 589700 596670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00041 42 523 Monolignol Biosynthesis Gene Families AT4G19010 26.448 7.44e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00041 K14760 - gmx:100809925 889.412