Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00040 ATGGCTAACTACTCCAACCCTCATATCTGCCAATGTTTGAGTCGCTTGCTAACCTTCCGGCGACACTTTCCGGTCACTATCTCCGGCCACCGCCGCAGGACCGGCCAACAGTTGGTGGAGGAAGTGTTGTCCCTAGCACAAGGCCTAATCCAGCTAGGAGTCACACCAGGTGACGTGGTCGCCATCTCTGCTTACAATAGTGATTGGTATCTGGAGTGGTTATTAGCCATTGCATATGTTGGAGGGATAGCTGCTCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAGATTAGCAATGACTGCAGTGAGGCCAGTGATGTTAGTGACTGATGAGAGCTGCTATACGTGGTGCTTAAAACTCCAGAAAAATGATATTCCATCTCTGAGGTGGCTTATTTTGTTGGATTCCCCTTCCTTAAATTTTACAAAGAAGTGGAATGGAACTACGGGAAAGCCTAAGGGAGTCACCCTAAGCCATGGAGCTTTGATCACACAATCCCTAGCCAAGATTGCCGTAGTTGGGTACAGTGAGGATGATGTCTATCTGCATACTGCTCCATTATGCCATATTGGTGGCTTGTCATCAGCCATGGCCATGCTTATGGTTGGTGGTTGCCATGTCTTGTTGCCAAAGTTTGATGCAAACTCAGCTGTTGGTGCCATACAGCAATTTTCCGTGACATCTTTTATAACAGTTCCTGCAATAATGGCCAGTCTGATTTCTGTAATTAGGCACAAACAGACCTGGAAAGGCGGAGAAACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTCATCAAGGACACTAGCATATTCTTCCATAAAGCCAAGCTTATTTCAGCTTATGGGATGACAGAGACATGCTCTTCATTGACATTCCTAACACTCTATGATCCAATGCATGAAACCACAAGCCATCCCCTTCAAATATTTGGTGTGGCAGGATCCAATATAATTCACCAGCCACAAGGTGTTTGTGTTGGCAAGGCTGCACCCCATGTAGAACTGAAGATATGTGCAGATGCCTCTGGTCACATTGGGAGAATTTTAACTAGAGGACCACATACAATGCTCAGGTATTGGGATCAAATCCTCACAAACCCATTAAATCAGAGGAATGAAGTATGGTTTGACACAGGTGACATTGGATCTATTGACTGTTATGGCAATTTGTGGCTCCTTGGACGAACAAATGGTCGTATCAAGAGTGGTGGGGAGAATATTTACCCTGAAGAGGTTGAGGCAATTCTACGAGAACATCCAGGGATTGCTAGTGTTGTTGTTGTGGGAATCCCAGATGCTTACCTGACAGAGATGGTGGCAGCATGTATCCAACTAGGAGAAAATTGGCAATGGTCAGAGCAATCAGCTTCAAATGAAGAGTTTCACCTATCTAGAAAGAATCTCCAGCAATATTGCATGGAAAATAATTTAAGCAGGTTTAAGATACCGAAAATATTTATTGTATGGAAGAAGCCTTTTCCACTCACTACCACAGGAAAAATAAGAAGAGACCAAGTTGGAAAGGAAGTTATGTCTCATTTACAATCTTTGCATAGTAATCTTTGA 1584 0.4407 MANYSNPHICQCLSRLLTFRRHFPVTISGHRRRTGQQLVEEVLSLAQGLIQLGVTPGDVVAISAYNSDWYLEWLLAIAYVGGIAAPLNYRWSFEEARLAMTAVRPVMLVTDESCYTWCLKLQKNDIPSLRWLILLDSPSLNFTKKWNGTTGKPKGVTLSHGALITQSLAKIAVVGYSEDDVYLHTAPLCHIGGLSSAMAMLMVGGCHVLLPKFDANSAVGAIQQFSVTSFITVPAIMASLISVIRHKQTWKGGETVKKILNGGGSLSLELIKDTSIFFHKAKLISAYGMTETCSSLTFLTLYDPMHETTSHPLQIFGVAGSNIIHQPQGVCVGKAAPHVELKICADASGHIGRILTRGPHTMLRYWDQILTNPLNQRNEVWFDTGDIGSIDCYGNLWLLGRTNGRIKSGGENIYPEEVEAILREHPGIASVVVVGIPDAYLTEMVAACIQLGENWQWSEQSASNEEFHLSRKNLQQYCMENNLSRFKIPKIFIVWKKPFPLTTTGKIRRDQVGKEVMSHLQSLHSNL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00040 527 SUPERFAMILY Acetyl-CoA synthetase-like 8 519 - -
Gabi3947g00040 527 CDD AFD_class_I 148 508 - -
Gabi3947g00040 527 Gene3D - 3 401 IPR042099 -
Gabi3947g00040 527 Pfam AMP-binding enzyme C-terminal domain 417 506 IPR025110 -
Gabi3947g00040 527 Gene3D - 404 519 IPR045851 -
Gabi3947g00040 527 PANTHER ACYL-COA SYNTHETASE 5 515 - -
Gabi3947g00040 527 Pfam AMP-binding enzyme 148 408 IPR000873 -
Gabi3947g00040 527 Pfam AMP-binding enzyme 26 143 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00040 Gabi-Chr3947 589700 596670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00040 42 522 Monolignol Biosynthesis Gene Families AT4G19010 25.996 3.42e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00040 K14760 - gmx:100809925 889.797