Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00010 ATGATTCTGCAATTTGCATTATTTCATATCATTGCTTTGATAATATGTCCCATATATACACTAGCATCTGTCGAAGGTTCTGTTATAGCACAACTTGGTTGTGATTCGACATGTGGAAACGTTTTGATCCCTTACCCTTTTGGAATGAAAGATCCCAAATGCTATGGAGACAAGTGGTTTGAAATAGAATGCAGGAACACTTCTCAAGGTAATAAACCTTACTTGAAATCTTTAAATCTGGAGGTGACATTAATCTCTGAAAGCATAAGTGCAATTCAAATCATGAATCCGATTTACCATTTGAACTGCCAAGGCAAAAGCGCTAATCCAGTTATTAACCTGAGAGGAAGCCCTTTCGTGTATTCCCAGCAGTACGATAAATTTGTAGCTGTTGGTTGCAACAATGTTGCTTTTTTGAGGTCAAATGGGTCAGCTGTTGGTGGTTGTGTTTCCATTTGTGATGACAATGAAGAAGTTAACGATAGCACTGTCCTAGGAAGGGATGGTTGTCATGGCAGGTACTGCTGCGAGACTTCACTGCCTTTGTATCTTTCAGAATATAATGCAACGGTTCAAAAGCTAAGGAACGAAAGTTTGAGTCATGTTCAGTGTAGTAACGCGTTAATTGTGGATGATAATTGGCTTGTGAACTACTATAAGTTTAATTTATCTACCCAGAGATTTGGTGAACTAAAGAATATGGATTATGTTCCTGCGATGCTTGAGTGGGAGATCATAATCGAGATATTGAACAATTCAATCTTTGAACTTCCTTCAGATGCAAACTGCTATAACTCTAATGTTACATCTTCACAAAACACAACCTCAGGTCGGAGATGTCGCTGCTTCATTGGCTTCGATGGCAATCCCTACATAGCTGGAGGCTGCACAGCTATACCGGGGTTCTTTCCTTCGGATGGTCATGCGAAGAAGTGGGCTATAGTAGGAGTTTCGTCAAGCATCGGATCGATCATTTTGGTCCTTGTTCTATGGCTCTTGCATAAAGTTGTAAGGAAAAGAATGATAAAGAAACGCAAAGAAAAATTCTTCAAAAAAAATGGTGGTTTGTTGTTACAGCAAAGAATGTCTTCTGATGAAGTTAATGTCGACCAAACTATTCTCTTCAGCTTAAAGGAATTAGAAAAGGCCACCGACAACTTTAATACGAACAGAGTTCTTGGAAAGGGAGGCCAAGGTACCGTTTACAAAGGCATGCTAGTTGATGGTAGAATTGTTGCTGTGAAAAAGTTTAAGGTCGAAGGAAAGGTTGAAGAATTCATCCACGAGTTTGTCATCCTTTCACAAATTAACCATAGAAATGTGGTCAAGTTGTTAGGATGTTGTTTGGAGACAGAAATTCCATTGCTTGTCTATGAATTCATTCCTAATGGTAACCTTTTCGAATATTTGCATGATGAAAATGAGGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACTGAAATTGCAGGAGCTCTATTTTACTTACACTCACTCACATCTCAGCCCATTTATCACAGAGACATCAAATCAACAAATATACTATTGGATGAAAAGTATAAGGCAAAAGTAGCAGACTTTGGAGCATCCAGAATAGTTTCCATTGAAGCTACTCATCTCACCACAGTAGTTCAAGGTACTTTTGGATACTTGGATCCTGAGTATTTTCTCACTAGTCAATTTACTGAGAAGAGTGATGTCTTTAGTTTTGGAGTAGTTCTTGTTGAGCTTTTAACTGGGATGAAGCCTATCTCAACAATATCTAAGGAAACCAAGAGTTTGTCTTCTTATTTTGTTCAATGTATGGAGGAGAATAGTTTTTTTGACATTATTGACAGAAGAGTCACGAAGGAAGGGGAGAAAGAACATATAATTGCAGTTGCCAATCTTGCAAATAGATGCTTAGAGATGAATGGGAGAAAACGACCAACTATGAAAGAAGTCACATTGCAATTAGAAGAGATTCGAAGATTGGATAGGAAGCCCAATGCACAAATAAATCAAGAAGAAATTGAGCTAGCTGGAATTGTAGACTATCAACCTTGGACTAGATACTCTACATCAAATTCATCAGCCCTTTCCTCAGACTCGAATGTTATGCATATTCTTACATTAAAATAA 2127 0.3808 MILQFALFHIIALIICPIYTLASVEGSVIAQLGCDSTCGNVLIPYPFGMKDPKCYGDKWFEIECRNTSQGNKPYLKSLNLEVTLISESISAIQIMNPIYHLNCQGKSANPVINLRGSPFVYSQQYDKFVAVGCNNVAFLRSNGSAVGGCVSICDDNEEVNDSTVLGRDGCHGRYCCETSLPLYLSEYNATVQKLRNESLSHVQCSNALIVDDNWLVNYYKFNLSTQRFGELKNMDYVPAMLEWEIIIEILNNSIFELPSDANCYNSNVTSSQNTTSGRRCRCFIGFDGNPYIAGGCTAIPGFFPSDGHAKKWAIVGVSSSIGSIILVLVLWLLHKVVRKRMIKKRKEKFFKKNGGLLLQQRMSSDEVNVDQTILFSLKELEKATDNFNTNRVLGKGGQGTVYKGMLVDGRIVAVKKFKVEGKVEEFIHEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDENEDLPMTWDMRLRIATEIAGALFYLHSLTSQPIYHRDIKSTNILLDEKYKAKVADFGASRIVSIEATHLTTVVQGTFGYLDPEYFLTSQFTEKSDVFSFGVVLVELLTGMKPISTISKETKSLSSYFVQCMEENSFFDIIDRRVTKEGEKEHIIAVANLANRCLEMNGRKRPTMKEVTLQLEEIRRLDRKPNAQINQEEIELAGIVDYQPWTRYSTSNSSALSSDSNVMHILTLK 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00010 708 SMART serkin_6 387 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00010 708 Gene3D Phosphorylase Kinase; domain 1 358 460 - -
Gabi3947g00010 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Gabi3947g00010 708 SUPERFAMILY Protein kinase-like (PK-like) 364 654 IPR011009 -
Gabi3947g00010 708 Gene3D Transferase(Phosphotransferase) domain 1 461 680 - -
Gabi3947g00010 708 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 662 IPR045274 GO:0007166
Gabi3947g00010 708 FunFam Wall-associated receptor kinase 2 461 676 - -
Gabi3947g00010 708 Pfam Wall-associated receptor kinase galacturonan-binding 34 93 IPR025287 GO:0030247
Gabi3947g00010 708 FunFam Wall-associated receptor kinase 2 357 460 - -
Gabi3947g00010 708 ProSiteProfiles Protein kinase domain profile. 387 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00010 708 Pfam Protein kinase domain 388 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00010 Gabi-Chr3947 145676 149408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00010 5 658 Receptor kinase-like Gene Family AT1G69730 43.284 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3947g00010 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00010 - - gmx:100798794 922.924