Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00009 ATGATTCTGCAATTTGCATTATTTCATATCATTACTTTGATACTGTGGACCATATATCCACTAGCATGTGTCGAAGGTTATGTTATAGCACAATCTGGTTGTGATTCGGCATGTGGAGACGTTAACATCCCTTACCCTTTTGGAATGAAAGATCCCAAATGCTATGTAGACAAGTGGTTTGAAATAGAATGCAGAAACACTTCTTCTCAAGGAAGTCAGATACCTTACCTGAAATCTTCAAATCTGGAGGTGAAATTAATTGATGAAGAGCTAAGCACAATTGAAATCATGAATCCGATTTACCATTCAAACTGCAAACGCAAAAACGCTGAGCCAATTATAAACCTGAGAGGAAGCCCTTTCGTGTATTCACAGGACTACAATAAATTTGTAGCCGTTGGTTGCAACAATGTTGTTTTTTTAAGGTCAAGTGGGTCAGAAGTTGGTGGTTGTGTTTCCATTTGTGATGGCAATGAAGAAGTTAACAATAACTTTGTCCTTGGATACGTTGGTTGTTATGGCAGGTCCTGCTGCGAAACTTCACTGCCTTTGTATCTTTCAGAATATAATGCAACGGTTCAAGATCTAAGGGACGGAAGTGTGAGTCATCGGTGTAGTTATGTGTTAATTGTAACTGATGATTGGCTCCAGAGCTACCAGATATATAATTCATCTACTCACAGATTTTCTTACCTGAAAAATATGGATTATGTTCCTGCGGTGCTTGAGTGGGAGATCTTATTAGAGATGTATAACAATTCGATCTTTAAAATTCCTTTAGATGCAAAGTGCTATGACTCTAATGTTACATCTTCACAAAACACAACCTCAAGTGGTCTGAGATGTAACTGCTTCACAGGCTACAGTGGCAATCCCTACATCGCTGGAGGCTGCACAGCTATACCGGGGTTCTTTGATACGAATAGTCAAGCGAAAAAGAGGGCTATAGTAGGAGTTTTGTCAAGCATTGGATCCATCATTTTGTTCCTTGTTCTATGGCTTTTGCATAAAGTTGTAAGGAAAAGAATGATAAAGAAACGCAAAGAAAAATTCTTCAAAAAAAATGGTGGTTTGTTGTTGCAGCAGAGATTGACTTCTGGTGAAGTTAATGTTGACAGAGCTATTCTCTTCAGCTTAAAGGACTTAGAAAAGGCCACCGACAACTTTAATATGAACAGGGTTCTTGGAAAGGGAGGCCAAGGTACCGTTTACAAAGGCATGCTAGTTGATGGTAGAATTGTTGCTGTGAAAAAGTTTAGGGTCGAAGGAAAGGTTGAAGAATTCATCAACGAGTTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACAGAAATTCCCTTGCTTGTCTATGAATTCATTCCTAATGGTAACCTTTTCGAATATTTGCATGATGAAAATGAGGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACTGAAATTGCAGGAGCTCTATTTTACTTACACTCACTTACATCTCAGCCCATTTATCACAGAGACATCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAAGTAGCAGACTTTGGAGCATCCAGAATAGTTTCCATTGAAGCTACTCATCTCACCACAGTAGTTCAAGGTACTTTTGGATACTTGGATCCTGAGTATTTTCAAACTAGTCAATTTACAGAAAAAAGTGATGTCTATAGTTTTGGGGTAGTTCTTGTTGAACTTTTAACTGGGAAGAGGCCAATATCCTCAACAATAATTAAAGAAACCAGGAGTTTGGCTTCATATTTTATTAAGTGTATGGAGGAGAATAGTCTATTTGACATTATTGATAAAAGAGTCACGGATGAAGGGGAGAAAGCACATATAATTGCAGCTGCCAATCTTGCAAATAGATGCTTAGAGATGAATGGGAGAAAAAGACCAACTATGAAAGAAGTCACATTGGAATTAGAAGAGATCAGGAGATTGGATAGCAAGTCTAATGCACAGAAAAATCATGAAGAAATTGAGCTTGCATGTCAAATTCATTGCCAACTCTAA 2061 0.377 MILQFALFHIITLILWTIYPLACVEGYVIAQSGCDSACGDVNIPYPFGMKDPKCYVDKWFEIECRNTSSQGSQIPYLKSSNLEVKLIDEELSTIEIMNPIYHSNCKRKNAEPIINLRGSPFVYSQDYNKFVAVGCNNVVFLRSSGSEVGGCVSICDGNEEVNNNFVLGYVGCYGRSCCETSLPLYLSEYNATVQDLRDGSVSHRCSYVLIVTDDWLQSYQIYNSSTHRFSYLKNMDYVPAVLEWEILLEMYNNSIFKIPLDAKCYDSNVTSSQNTTSSGLRCNCFTGYSGNPYIAGGCTAIPGFFDTNSQAKKRAIVGVLSSIGSIILFLVLWLLHKVVRKRMIKKRKEKFFKKNGGLLLQQRLTSGEVNVDRAILFSLKDLEKATDNFNMNRVLGKGGQGTVYKGMLVDGRIVAVKKFRVEGKVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDENEDLPMTWDMRLRIATEIAGALFYLHSLTSQPIYHRDIKSTNILLDEKYRAKVADFGASRIVSIEATHLTTVVQGTFGYLDPEYFQTSQFTEKSDVYSFGVVLVELLTGKRPISSTIIKETRSLASYFIKCMEENSLFDIIDKRVTDEGEKAHIIAAANLANRCLEMNGRKRPTMKEVTLELEEIRRLDSKSNAQKNHEEIELACQIHCQL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00009 686 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 668 IPR045274 GO:0007166
Gabi3947g00009 686 Gene3D Transferase(Phosphotransferase) domain 1 463 684 - -
Gabi3947g00009 686 FunFam Wall-associated receptor kinase 2 463 679 - -
Gabi3947g00009 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Gabi3947g00009 686 SUPERFAMILY Protein kinase-like (PK-like) 372 657 IPR011009 -
Gabi3947g00009 686 Gene3D Phosphorylase Kinase; domain 1 357 462 - -
Gabi3947g00009 686 Pfam Protein kinase domain 390 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00009 686 CDD STKc_IRAK 395 660 - -
Gabi3947g00009 686 FunFam Wall-associated receptor kinase 2 359 462 - -
Gabi3947g00009 686 SMART serkin_6 389 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00009 686 ProSiteProfiles Protein kinase domain profile. 389 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00009 686 Pfam Wall-associated receptor kinase galacturonan-binding 34 96 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00009 Gabi-Chr3947 126532 130371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00009 34 661 Receptor kinase-like Gene Family AT1G69730 45.416 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3947g00009 Pkinase 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00009 - - gmx:100798794 914.064