Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00008 ATGATTCTGCAATTTGCACTGTTTCAAATCATTACTTTGATAATACGTCCCATATATACACTAGCATCTGTCGAAGGTTCTGTTATAGCACAACCTGGTTGTGATTCGACATGTGGAGAAGTTGACATCCCTTACCCTTTTGGGATGAAAGATCCAAAATGCTATGGAGGCAAGTGGTTTGAAATAGAATGCAGAAACAGTACTTCTCAAGGTGAGAAACCTTACCTGAAATCTTTAAATCTGGAAGTAACATCCATTGATGAAGAGCGAAGCACAATTCTAATCAAGAATCCGATTTACCATTCAAACTGCAAAGGCAAAAGCGCTAAGCCAGTTGTTATAAACCTGAGAGGAAGCCCTTTCGTGTATTCCCAGGTGTACAACAAATTTGTAGCCGTTGGTTGCAACAATCTTGCTTTTTTGAGGTCAAATGGGTCAACTGTTGGTGGTTGTGTTTCCATTTGTGATGACAACGAAGAAGTTAATTACGATAGCTTTGTCCAAGGAAGCGGTGGTTGTCATGGCAGGTACTGCTGCGAGACTTCACTGCCTTTGTCTCTTTCAGAATATAATGCAACGGTTGAAGATCTAAGGAACGAAGGTGTGAGTCATCAGTGTAGTTATGCGTTAATTGCAAGAGGCGATTGGCTCCAGAGCTACTATATCTATGAATCTGAATCATCTAATCAGATATTTGGTGAACTGAAAAATATGGATTATGTTCCTGCGATGCTTGAGTGGGAGATCTTAAACGAGATGTTGAACAATTCCATCTTAAAACTTCCTTCAGATGGAAACTGCTATGACTCTAATGTTACATCTTCACAAAACACAACCTCAGGTGGTCTGAGATGTAACTGCTTCTTTGGCTTCGCTGGCAATCCCTACATTGCTGGAGGCTGCACAGCTATACCAGGGTTCTTTACTACGAATAGTCAAGCGAAGAAAAGGGCTATAATAGGAGTTTTGTCAAGCATCGGATCCATAATTTTGCTACTCCTTCTATGGCAGCTGCGTAAATTTGTAAGGAAAAGAATGATAAAGAAACGCAAAGAAAAATTCTTCAAAAAAAATGGTGGTTTGTTGTTGCAGCAAAGATTGACTTCTGGTGAAGTTAATATTGATAAAACTATTCTCTTCAGCTTAAAGGAATTAGAAAAGGCCACAGACAACTTCAATATGAATAGAGTTCTTGGAAAAGGAGGCCAAGGTACCGTTTACAAAGGCATGCTAGTTGATGGTAGAATTGTTGCAGTGAAAAAGTTTAAGGTCGAAGGAAAGGTTGAAGAATTCATCAACGAGTTTGTCATTCTTTCACAAATAAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAAACAGAAATCCCCTTGCTTGTCTATGAATTCATTCATAATGGTAACCTTTTTGAGTATTTGCATGATGAAAATGAGGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACTGAAATTGCAGGAGCTCTATTTTACTTACACTCACTTACATCCCAACCCATTTATCATAGAGACATCAAATCAACAAATATATTGTTAGATGAAAAGTATAGGGCAAAAGTAGCAGACTTTGGAGCATCTAGAATAGTTTCCATTGAAGCTACTCATCTCACCACAGTAGTTCAAGGTACTTTTGGATACTTGGATCCTGAGTATTTTCAAACTAGTCAATTTACAGAAAAAAGTGATGTCTATAGTTTTGGGGTAGTTCTTGTTGAACTTTTAACTGGGAAGAAGCCAATATCCTCAACAATATCTAAGGAAACCAGGAGTTTGGCTTCATATTTTGTTCAGTGTATGGAGGAGAATAGTCTGTTTGACATTGTCGATAAAAGAGTCACGGATGAAGGGGAGAAAGAACATATAGTTGCAATTGCCAATCTTGCAAATAGATGCTTAGAGATGAATGGGAGAAAAAGACCAACTATGAAAGAAGTCACATTGGAATTAGAAGAGATTCGGAGATTGGATAACAAGTCTAATGCACAGAAAATTCATGAAGAAATTGTTCTTGTTGGAATTGAAGACTACCAACCTTGGAGTGGATACTCTGCATCAAATTCATTGCCAACTCTAAGTAGCTGA 2115 0.3811 MILQFALFQIITLIIRPIYTLASVEGSVIAQPGCDSTCGEVDIPYPFGMKDPKCYGGKWFEIECRNSTSQGEKPYLKSLNLEVTSIDEERSTILIKNPIYHSNCKGKSAKPVVINLRGSPFVYSQVYNKFVAVGCNNLAFLRSNGSTVGGCVSICDDNEEVNYDSFVQGSGGCHGRYCCETSLPLSLSEYNATVEDLRNEGVSHQCSYALIARGDWLQSYYIYESESSNQIFGELKNMDYVPAMLEWEILNEMLNNSILKLPSDGNCYDSNVTSSQNTTSGGLRCNCFFGFAGNPYIAGGCTAIPGFFTTNSQAKKRAIIGVLSSIGSIILLLLLWQLRKFVRKRMIKKRKEKFFKKNGGLLLQQRLTSGEVNIDKTILFSLKELEKATDNFNMNRVLGKGGQGTVYKGMLVDGRIVAVKKFKVEGKVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIHNGNLFEYLHDENEDLPMTWDMRLRIATEIAGALFYLHSLTSQPIYHRDIKSTNILLDEKYRAKVADFGASRIVSIEATHLTTVVQGTFGYLDPEYFQTSQFTEKSDVYSFGVVLVELLTGKKPISSTISKETRSLASYFVQCMEENSLFDIVDKRVTDEGEKEHIVAIANLANRCLEMNGRKRPTMKEVTLELEEIRRLDNKSNAQKIHEEIVLVGIEDYQPWSGYSASNSLPTLSS 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00008 704 ProSiteProfiles Protein kinase domain profile. 392 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00008 704 FunFam Wall-associated receptor kinase 2 362 465 - -
Gabi3947g00008 704 Pfam Wall-associated receptor kinase galacturonan-binding 34 96 IPR025287 GO:0030247
Gabi3947g00008 704 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 670 IPR045274 GO:0007166
Gabi3947g00008 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Gabi3947g00008 704 Gene3D Phosphorylase Kinase; domain 1 364 465 - -
Gabi3947g00008 704 SUPERFAMILY Protein kinase-like (PK-like) 377 663 IPR011009 -
Gabi3947g00008 704 Gene3D Transferase(Phosphotransferase) domain 1 466 686 - -
Gabi3947g00008 704 FunFam Wall-associated receptor kinase 2 466 681 - -
Gabi3947g00008 704 SMART serkin_6 392 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00008 704 Pfam Protein kinase domain 393 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00008 704 CDD STKc_IRAK 398 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00008 Gabi-Chr3947 109680 113101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00008 34 664 Receptor kinase-like Gene Family AT1G69730 45.927 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3947g00008 Pkinase 5.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00008 - - gmx:100798794 938.332