Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3947g00007 ATGGTTGTGCAATTTGCATTCCACATAATCATTTTGATGATAGTAGGGCTCATATATCCATTGGCATCTGCACAGAATATAATCACGACACAATCTGGTTGTGATTATTACAGTTGTGGAATTGGGATACCTTACCCGTTTGGAATAGGTGATCCCAAATGCTATGCAGACAAGTGGTTTGAAATAGAATGCAGAAACACTTCTCAAGGTGAGATACCTTACCTGAAATCTCTAAATCTGGAAGTGACATCCATTGATGACAGTAACAGCAAGGTTAACATCATGAATCCAGTTTTCAGTTGGAACTGCAAAAGCAAAGATTCTCGGCCAATCATAGACCTTAAAGGAAGCCCTTTCGTGTTTTCCAAGGATGATAACAAGTTCACTGCCATTGGTTGCAATAAGATTGCGTTTTTGCAATCAAATGGATCACAAGTTAGTGGGTGCGTTTCCGTTTGTGACGAGTACGACAACGAACAAGTTAACAATAACATCGACTTCGGAAGCGATGGTTGTCTTGGTAGGTTCTGTTGCCAGACATCACTACCTGAGTATCTTTCGGAATTTAATGTAACACTCGAAAACCTGAGCAACAGAAGCGTGAGTGATGAGTGTAGTCACGCGCTGATTGCAACAGAATATTGGTACCGAGTACCCTTTGGGAATTCTTACGAGTATCGAAGTTTTCGTGACTTGGATGTGAGTTATGTTCCTGCGGTGCTTGATTGGGTGATTCTGAACTCGTCCATGAAAGTCGACCATGCAGGTGCCAACTGCACTATCGTTCCATCTTCATTGTACAGACCCTCAGGTTGGAGATGTGAGTGCTCCCTAGGCGCCTATGGCGATCCATACATTACTGGAGGCTGTGTTGCTATATCAGGATTCTTTGATACGAATAGTCAAGCGAGGAAGAGGGCTATAGTAGGAGTTTTGTCAAGCATCGGATCCATCATTTTGTTTTTTGTTCTATGGTTGTTGCATAAAGTTGTAAGGAAAAGAATGATAAAGAAACGCAAAGAAAAATTCTTCAAAAAAAATGGTGGTCTGTTGTTACAGCAAAGAATGTCTTCTGGTGAAGTTAATGTCGACCAAACTATTCTCTTCAGCTTAAAGGAATTAGAAAAGGCCACTGACAACTTTAATACGAACAGAGTTCTTGGAAAGGGAGGCCAAGGTACCGTTTACAAAGGCATGCTAGTTGATGGTAGAATTGTTGCTGTGAAAAAGTTTAAGGTCGAAGGAAAGGTTGAAGAATTCATCAACGAGTTTGTCATCCTTTCACAAATTAACCATAGAAATGTGGTTAGGTTGTTAGGATGTTGTTTGGAGACAGAAATCCCCTTGCTTGTCTATGAATTCATTCCTAACGGTAACCTTTTCGAATATTTGCATGATGAGAATGAGGTATTACCAATGACATGGGATATGCGTTTGCGAATTGCCACTGAAATTGCAGGAGCTCTATTTTACTTACACTCGCTTACATCTCAGCCCATTTATCACAGAGACATCAAATCAACAAATATATTGTTGGATGAAAAGTATAGGGCAAAAGTAGCAGACTTTGGAGCATCCAGAATAGTTTCCATTGAAGCTACTCACCTCACCACAGTAGTTCAAGGAACTTTTGGATACTTGGATCCAGAGTATTTTCAAACTAGTCAATTGACAGAAAAAAGTGATGTCTACAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGGAAGAAGCCAATATCCTCAACAATATCTGAAGAAACCAAGAGTTTAGCTTCATATTTTGTTCAGAGTATGGAAGAGAATCGTCTTTTTGACATTATTGACAAGAGAGTCACGATGGAAGGGGACAAAGAACATATAATTGCAGTTGCCAATCTTGGAAATAGATGCTTAGAGTTGAATGGAAGAAAACGACCAACTATGAAAGAAGTCACTTTGGAATTAGAAGAGATCCGAAGATTGGATAGGAAGTCTAATGCACAGCAAAACCCTGAAGAAATTGAACTTGCTGGCATTCAAGACTACCAACCTTGGGCTGAATATTCTACATCAAATTCATTGACAACTCTAAGCAGCGCAACACTTTCCCGAGACACAGATATTATGCATATTCTTCCATTAAAATAA 2130 0.3958 MVVQFAFHIIILMIVGLIYPLASAQNIITTQSGCDYYSCGIGIPYPFGIGDPKCYADKWFEIECRNTSQGEIPYLKSLNLEVTSIDDSNSKVNIMNPVFSWNCKSKDSRPIIDLKGSPFVFSKDDNKFTAIGCNKIAFLQSNGSQVSGCVSVCDEYDNEQVNNNIDFGSDGCLGRFCCQTSLPEYLSEFNVTLENLSNRSVSDECSHALIATEYWYRVPFGNSYEYRSFRDLDVSYVPAVLDWVILNSSMKVDHAGANCTIVPSSLYRPSGWRCECSLGAYGDPYITGGCVAISGFFDTNSQARKRAIVGVLSSIGSIILFFVLWLLHKVVRKRMIKKRKEKFFKKNGGLLLQQRMSSGEVNVDQTILFSLKELEKATDNFNTNRVLGKGGQGTVYKGMLVDGRIVAVKKFKVEGKVEEFINEFVILSQINHRNVVRLLGCCLETEIPLLVYEFIPNGNLFEYLHDENEVLPMTWDMRLRIATEIAGALFYLHSLTSQPIYHRDIKSTNILLDEKYRAKVADFGASRIVSIEATHLTTVVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLVELLTGKKPISSTISEETKSLASYFVQSMEENRLFDIIDKRVTMEGDKEHIIAVANLGNRCLELNGRKRPTMKEVTLELEEIRRLDRKSNAQQNPEEIELAGIQDYQPWAEYSTSNSLTTLSSATLSRDTDIMHILPLK 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3947g00007 709 CDD STKc_IRAK 387 652 - -
Gabi3947g00007 709 FunFam Wall-associated receptor kinase 2 351 454 - -
Gabi3947g00007 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Gabi3947g00007 709 SUPERFAMILY Protein kinase-like (PK-like) 365 654 IPR011009 -
Gabi3947g00007 709 Gene3D Phosphorylase Kinase; domain 1 352 454 - -
Gabi3947g00007 709 Pfam Protein kinase domain 382 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00007 709 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 661 IPR045274 GO:0007166
Gabi3947g00007 709 SMART serkin_6 381 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00007 709 ProSiteProfiles Protein kinase domain profile. 381 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3947g00007 709 FunFam Wall-associated receptor kinase 2 455 671 - -
Gabi3947g00007 709 Pfam Wall-associated receptor kinase galacturonan-binding 34 94 IPR025287 GO:0030247
Gabi3947g00007 709 Gene3D Transferase(Phosphotransferase) domain 1 455 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3947g00007 Gabi-Chr3947 104336 107716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3947g00007 39 653 Receptor kinase-like Gene Family AT1G16130 45.970 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3947g00007 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3947g00007 - - gmx:100798794 883.248