Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3943g00041 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGACAAGTCACTTTCTCAAAGCGGCGTAATGGGTTGCTGAAGAAGGCTTTTGAACTATCTGTTCTTTGTGATGCTGAGGTAGCTCTTATCATCTTCTCTCCAAGAGGAAAACTTTACGAATTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTTCTCAAACAGCACACAAACCGGATGAACAAAATAATCAGCATTTGAAGCAAGAAGCAGCAAGCTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAACTCTTGGGAGAAGGATTGGGGTCATGCTCCATGGAAGAACTGCAACAGATTGAAAAACAGTTGGAAAAGAGTGTAAGCAATATTCGACAAAGAAAGACTCAGGTTTACAAGGAACAAATTGAGCACCTAAAAGAAAAGGAAAAATCCCTACTTGCTGAAAATGCTAGGCTCTCTGAGCAGCATGATATCCAGCCAGAGCCAGCAACAAAGGATCAGAGAGAAAATCAACCCTATGAAGAAAGCAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGATTACATAGGTCCAATTGA 630 0.427 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSSQTAHKPDEQNNQHLKQEAASLMKKIELLEASKRKLLGEGLGSCSMEELQQIEKQLEKSVSNIRQRKTQVYKEQIEHLKEKEKSLLAENARLSEQHDIQPEPATKDQRENQPYEESSPSSDVETELFIGLHRSN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3943g00041 209 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3943g00041 209 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Gabi3943g00041 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3943g00041 209 Coils Coil 87 114 - -
Gabi3943g00041 209 MobiDBLite consensus disorder prediction 161 209 - -
Gabi3943g00041 209 FunFam MADS-box protein SOC1 14 95 - -
Gabi3943g00041 209 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Gabi3943g00041 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3943g00041 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3943g00041 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3943g00041 209 MobiDBLite consensus disorder prediction 161 187 - -
Gabi3943g00041 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi3943g00041 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi3943g00041 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi3943g00041 209 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3943g00041 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Gabi3943g00041 209 Coils Coil 121 170 - -
Gabi3943g00041 209 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3943g00041 Gabi-Chr3943 539802 574249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3943g00041 1 158 MADS-box Gene Family AT2G45660 77.848 3.93e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi3943g00041 K-box 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3943g00041 - - gmx:100037477 343.969