Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3943g00026 ATGAGTTTCTTACAGGGAATAGTGGATTCGTTTAGCTCCATCTTCTCTCCCGATCCTTCTTCTTCTACTTCTTCTCAATCTCACCCCAATCTCACAGCTTCAGGAATGGAAGCTTCTCCGTCTTCGGTTTCAAACGAACGCGTAGCTTACAAGCTCAAAGGGTACTACGATTTGGCCACGCAAGAGATCGCAAAGGCAGTTAGGGCTGAAGAGTGGGGCTTGATCGACGACGCTCTTCTTCACTACAAGAACGCTCAAAGGATCCTCCTCGAGGCTAATTCAACTCCTGTTCCTTCCTTCATCACTTCCAGTGAACAACAGAAGGTGCAATCATATCGTCAAAAGATATCTAAATGGCAGGGCCAAGTTTCTGACAGATTACAGAGTCTCAGTAGACGAGCAGGTAGTTCATCTGCCAATCAGAGCACCTCAAAAATTGCACAAACTGCTGCAGTTCCAATTAAACCATCAAATACTAGAAACAATGTGTTGCAGAAGTTTCCTCAAACAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCTAGTCAAGCGTCTGGTGCAAATTATGACACAAAACTTGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGGCTTGAGAAAGCAAAACAAGCTCTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAAAGGGTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAGACCATGCTTGCCAAAGCAGTGGCTTCAGAATCCGAAGCAACATTTTTTAATGTGTCGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGAGAAAAGCTTGTCCGGACACTATTCATGGTAGCTGTATCCAGACAGCCATCTGTAATTTTCATGGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAGTGAGAATGATGCCAGCAGAAGATTAAAATCTGAATTTCTTATCCAGTTTGATGGAGTGACTTCCAATCCTAATGATATTGTGATTGTAATTGGTGCGACTAATAAGCCACAAGAATTGGATGATGCTGTTCTTAGGAGACTGGTAAAGAGAATATACATACCTTTACCAGAAGAAAATGTTCGGAAACTTCTGTTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTGGAGATTTAGAGAGGCTTGTAAAAGAGACAGAAGGATATTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTTGGTGCTGACATTCTTACTGTCAAGGCAAATCAGGTAAGAGGACTGAGGTACGAGGATTTCAAGAAGGCAATGGCTGTCATCAGACCAAGCCTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGCTGGAATGAGGAGTTTGGCTCTAATTGA 1452 0.4291 MSFLQGIVDSFSSIFSPDPSSSTSSQSHPNLTASGMEASPSSVSNERVAYKLKGYYDLATQEIAKAVRAEEWGLIDDALLHYKNAQRILLEANSTPVPSFITSSEQQKVQSYRQKISKWQGQVSDRLQSLSRRAGSSSANQSTSKIAQTAAVPIKPSNTRNNVLQKFPQTTGQVNKVGSPKSSQASGANYDTKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPAKGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAVSRQPSVIFMDEIDSIMSTRLASENDASRRLKSEFLIQFDGVTSNPNDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPEENVRKLLLKHKLKGQAFSLPSGDLERLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYEDFKKAMAVIRPSLNKSKWEELERWNEEFGSN 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3943g00026 483 CDD RecA-like_spastin 213 376 - -
Gabi3943g00026 483 MobiDBLite consensus disorder prediction 130 149 - -
Gabi3943g00026 483 SMART AAA_5 244 380 IPR003593 GO:0016887
Gabi3943g00026 483 FunFam AAA-type ATPase family protein 379 461 - -
Gabi3943g00026 483 Gene3D - 44 134 - -
Gabi3943g00026 483 PANTHER AAA DOMAIN-CONTAINING 60 482 - -
Gabi3943g00026 483 Pfam AAA+ lid domain 403 434 IPR041569 -
Gabi3943g00026 483 MobiDBLite consensus disorder prediction 15 39 - -
Gabi3943g00026 483 Gene3D - 207 477 IPR027417 -
Gabi3943g00026 483 FunFam AAA-type ATPase family protein 45 134 - -
Gabi3943g00026 483 Pfam Vps4 C terminal oligomerisation domain 449 481 IPR015415 -
Gabi3943g00026 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 480 IPR027417 -
Gabi3943g00026 483 SMART smart 52 129 IPR007330 -
Gabi3943g00026 483 Pfam ATPase family associated with various cellular activities (AAA) 248 378 IPR003959 GO:0005524|GO:0016887
Gabi3943g00026 483 CDD MIT_spastin 52 130 - -
Gabi3943g00026 483 ProSitePatterns AAA-protein family signature. 350 369 IPR003960 GO:0005524|GO:0016887
Gabi3943g00026 483 Gene3D - 379 461 - -
Gabi3943g00026 483 FunFam Spastin, putative 207 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3943g00026 Gabi-Chr3943 351105 357576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3943g00026 189 433 Calmodulin-binding Proteins AT3G56690 40.945 3.71e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3943g00026 K13254 - gmx:100780946 813.142