Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3943g00022 ATGGCAGCTAATATTCCCGCAACAAGCTCTTCTATGACGACGTCGTTTCACCAGAAACGACATCGTTCCATATTCGAAGTTCCACCAAACTTCTTCGATTCATGTCGTCTTCTCCCTTCTCTTCACTCACCCGTTTCTGAGAACCACAACGAAGGCCTCAAAACTATTGAACCACCCTCAAACGACGTTGTTGTTGACGATGCCCCTCCAAACGCCGTCGTTTCGGCAACTAGGTTGACATGCAATACCTGCAAGGCTCAATTCGATTCCCTTCAAGACCAGCGTTCCCATTTCAAATCCGACATCCATCGATTCAATGTGAAGCTGACAATTGCTGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGGTGCTTACATCTGAATCTGTCAAAGACTATGATGTGTCAAGTATTTCAGGATCAGAAAGTGATGATGACAGTGACATTGAGTCTCAAAGTCAAAAGGAAGTGCGTGACAAATCAAGTGAAAGTTTGAAACAAAAGCTACTTATATGTCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGCTTGATTATGAATATGACTGAAAATGTATCGTATGAGGATGAAAAATTGAAGAACGAAGTGATTGAGAGGTTGAAATCTCTGACTATTGAGCCTAGGGATAAAACACACTTGAGGGTCGTTCTTCTTGCATCCGGTGGGCATTTTGTGGGTTGTGTCTTTGATGGTGATGCGGTTGTGACCCACAAGACATTTCACAGATATGTTGTAAGGGCCAAGGCAGGAAAAAAACAGTCATCAAAAGATGCTTCTGGCAGGGCTGCACATTCTGCTGGGGCTTCACTTCGTCGTTATAATGAACTTGCATTAAAGAAGGAAGTTCACGACCTGCTTATTGCTTGGAGACCTTATTTCGATGCTTGCAATTGCATTTTTATAAATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAGACCATATTTTACCAATCGGCAGTGTGCTATTAGAAATATTGCTTTGACTGTACGGAGGCCTACTTTCAGGGAAGCAAAGCGTGTATATAGCCAGTTGACCCAAGTATCCAATGAAGCAGATGAGAAGGAAATTTTACAAAGCAACCAAGAGGACTTAGTATCAATTGACATTGCTAAAAGAAATGGTAGCCCACCCTCCAGCAAAGGTGACATGGCTGAGTTGGATGACAAAGATCACACTGAAGCTTGTTCGAGTAAACAAAATGATAAACTCCCCATTTCGAGTGATGAAGAGAGTGAAAATGAGCAACCTGGTAAATCAACTCCTTTACATCAAGCAGCACAATCTGGTGACTCTCAAAAGATTATGGAACTCCTGGAACAGGGCTTGGATCCTTGCATCAAAGATGAAAGGGGACGGACCCCATATATGTTGGCAAATGAAAAGGAAGTCAGGAATACATTCAGAAGGTTTATGGCGTCAAACCCTGACAAATGGGATTGGAATGCTGCAAAAGTGCCTAGTGCATTGACTAAAGATATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGGAAAGCTAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGCTGAAGCTGCCTTGCCTAAGAATGATTCCAAAACTGGAGAAAAGCAAGTGACTGCTCAAGCATCTACTAAGGGACAATCCCAACCAAAAAGTGGTGTGCAATTATCTAAAGAGGAGGAAATAAGAGCATCTCAGGCTGCAGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGAAGAATAGCTGCACTCAAAATTCAAGTTAATAGTGGAACTGCTGCACCTAGCAATTCAGAGCCTAAAAGTGGATTAGCCAGTGACATTTACTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAGGGAGATCCTAGAGGATGGATGA 1995 0.4231 MAANIPATSSSMTTSFHQKRHRSIFEVPPNFFDSCRLLPSLHSPVSENHNEGLKTIEPPSNDVVVDDAPPNAVVSATRLTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSESVKDYDVSSISGSESDDDSDIESQSQKEVRDKSSESLKQKLLICLQTGQRVSVWKCLIMNMTENVSYEDEKLKNEVIERLKSLTIEPRDKTHLRVVLLASGGHFVGCVFDGDAVVTHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRYNELALKKEVHDLLIAWRPYFDACNCIFINAPSSSRQLLYDGERPYFTNRQCAIRNIALTVRRPTFREAKRVYSQLTQVSNEADEKEILQSNQEDLVSIDIAKRNGSPPSSKGDMAELDDKDHTEACSSKQNDKLPISSDEESENEQPGKSTPLHQAAQSGDSQKIMELLEQGLDPCIKDERGRTPYMLANEKEVRNTFRRFMASNPDKWDWNAAKVPSALTKDMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQAEAALPKNDSKTGEKQVTAQASTKGQSQPKSGVQLSKEEEIRASQAAEREKRAAAAERRIAALKIQVNSGTAAPSNSEPKSGLASDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3943g00022 664 ProSitePatterns Zinc finger C2H2 type domain signature. 81 103 IPR013087 -
Gabi3943g00022 664 MobiDBLite consensus disorder prediction 508 522 - -
Gabi3943g00022 664 Pfam Bacteroidetes VLRF1 release factor 223 360 IPR041175 -
Gabi3943g00022 664 ProSiteProfiles Ankyrin repeat region circular profile. 429 461 - -
Gabi3943g00022 664 MobiDBLite consensus disorder prediction 501 595 - -
Gabi3943g00022 664 MobiDBLite consensus disorder prediction 135 160 - -
Gabi3943g00022 664 ProSiteProfiles Ankyrin repeat profile. 429 461 IPR002110 GO:0005515
Gabi3943g00022 664 Coils Coil 576 605 - -
Gabi3943g00022 664 MobiDBLite consensus disorder prediction 550 573 - -
Gabi3943g00022 664 SUPERFAMILY Ankyrin repeat 431 486 IPR036770 -
Gabi3943g00022 664 MobiDBLite consensus disorder prediction 394 428 - -
Gabi3943g00022 664 Pfam Vms1-associating treble clef domain 627 659 IPR041540 -
Gabi3943g00022 664 MobiDBLite consensus disorder prediction 379 441 - -
Gabi3943g00022 664 MobiDBLite consensus disorder prediction 574 595 - -
Gabi3943g00022 664 Gene3D - 412 542 IPR036770 -
Gabi3943g00022 664 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 17 663 IPR047139 -
Gabi3943g00022 664 Coils Coil 505 543 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3943g00022 19 611 C2H2 Transcription Factor Family AT1G01930 52.545 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3943g00022 K26089 - gmx:100527709 950.658