Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3943g00016 ATGAGTTCAAAATATGATTTTCTGAAGGATGTTAATCCTGCCAAGGAGGACTGGAGGATTAAGGTGAAGGTGGTTCGGACTTGGAAAGTTCCTAACTTTCAGCGTAAAAATTTGGAGGACAATCTTGAAATGGTTTTATTGGATGAACAGGGTGGTAGGATCCACGCCACTGTCAAAGACGTCATTGGTTTAATCTCAGGAATTGGGAAAGTTTGTGATCGTGTGGTTTCTGGTAGGAAGACAAAAATGGTGGTGTTGGAGCTTGACGACCTGAGGGGTCATAAGTTGGAGTGCACTTTGTGGGAGCATTATGTGGATGAGGTCCAATCTTTTTTGGCAGACAACGACGATCCTCATAACGTCCTGATAGTCCAACTGGGAAGGATTAAGTGTTTTAGAGGTAAGGTCGGGATAACAAATACAAAATATACAACAAGGATTGTAATGGATTCAAAACTGAATGAGATTGTTGAGTTCAAAAAATGTCTCTCGATTGATGGTGTGGAAAGTAGTACAAGGATGACTCAATTGTCTACTCAGTCATCCTATTCTTTCGAAAATGATTTTCTTAAGGAGACTGAAAAAAAGTCTATCAGTGATGTGAAACTTTGTGTTGAGGTAACTACCTGCATCACATACGGGACTATAAAGGCAATTGAGAGCAAATACAACTGGTGGTACAAGTCATGCAAAAAGTGTCCATTTTCCGTTTATGAGGATTTTGAGAAGTGGTATTGTAAGAACTGCCAAAAACATTGGGAAGATTATTATCCGAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACAGATTCCGCATCCTTTATTCTGTTTGATCGCGACTGTGTGTCTTTGTTGGGAATGAGTGCTGCTGAATTGCGCGAGCTGCATTTCAAGAGGGGTGCCGATTTGGATCAATTTCCAAATGAGTTAAATGTTCTGAATGAAAAGTCAATGTTGTTCAAGATAAATGTTAAGCAAAAGGATTTGAACACAAATAGTGAGCCCAAATATCAAGTTTCCAAAATTTGTATCAGCGAAGACATAATCTCAGCGTTCATTAAGTCTCTTATAGATCCAAATGATGAAGCAAATTTCGATAATGCACGCGAAAATGAAGTTGTTTCGTCGGAACTGGAAAAGGCTGCGGATGTTGAAAGTCAGACCTGTGACAGTGCTGACGTTAGTGATGTCTCTCTGACGATGTTGACACCTGTGCTCACTTCTCATGATTCCATTGCTGGAGAATTTAAATTTTCAGCTGTTCGGCCGACAAAGAAAATAAAGCTTGAAAAGGAGTTACGTACTGTGAAAGCAAGAAATGCTAGATCAAGGCGGAAAGGTATCATGTTCCAAAAGAAGACTTCTAAGCAATATGTCAAGATAAACAATATACCAACGATGCTTGACTTGACAGGGATTGATGTGAACAGTGAGAATTCAGTGCTTTCAACCGTTACTGCGTTCAGTGATGAAAACTATATATCACGATACTGA 1497 0.3955 MSSKYDFLKDVNPAKEDWRIKVKVVRTWKVPNFQRKNLEDNLEMVLLDEQGGRIHATVKDVIGLISGIGKVCDRVVSGRKTKMVVLELDDLRGHKLECTLWEHYVDEVQSFLADNDDPHNVLIVQLGRIKCFRGKVGITNTKYTTRIVMDSKLNEIVEFKKCLSIDGVESSTRMTQLSTQSSYSFENDFLKETEKKSISDVKLCVEVTTCITYGTIKAIESKYNWWYKSCKKCPFSVYEDFEKWYCKNCQKHWEDYYPRFSVQVRVVDNTDSASFILFDRDCVSLLGMSAAELRELHFKRGADLDQFPNELNVLNEKSMLFKINVKQKDLNTNSEPKYQVSKICISEDIISAFIKSLIDPNDEANFDNARENEVVSSELEKAADVESQTCDSADVSDVSLTMLTPVLTSHDSIAGEFKFSAVRPTKKIKLEKELRTVKARNARSRRKGIMFQKKTSKQYVKINNIPTMLDLTGIDVNSENSVLSTVTAFSDENYISRY 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3943g00016 498 Pfam Replication factor-A C terminal domain 212 343 IPR013955 -
Gabi3943g00016 498 SUPERFAMILY Nucleic acid-binding proteins 6 59 IPR012340 -
Gabi3943g00016 498 Coils Coil 427 447 - -
Gabi3943g00016 498 Gene3D - 175 350 IPR012340 -
Gabi3943g00016 498 SUPERFAMILY Nucleic acid-binding proteins 208 344 IPR012340 -
Gabi3943g00016 498 CDD RPA1_DBD_B_like 60 161 - -
Gabi3943g00016 498 SUPERFAMILY Nucleic acid-binding proteins 58 168 IPR012340 -
Gabi3943g00016 498 CDD RPA1_DBD_C 210 359 IPR047192 -
Gabi3943g00016 498 Gene3D - 26 172 IPR012340 -
Gabi3943g00016 498 PANTHER OS03G0429900 PROTEIN 8 348 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3943g00016 Gabi-Chr3943 255607 264187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3943g00016 39 343 Core DNA Replication Machinery Family AT5G08020 24.138 1.13e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3943g00016 - - adu:107490971 220.705