Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3943g00008 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCTTCAGAAGGGTCAGGAGGGGCGAAGCTTTCACCTGTTGAGACTGTTACAGTTGCATGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTCGCAAAGGGCATTGGGGCAGCTACTGCTGCTTCACTTGTTAAGACTTTGGGCCGTAGATCCCGGCGCCAGCTTGGCGAGCGAGTCCATTTCTGTGTTCGCTGTGATTTCCCAATTGCTATTTATGGACGGCTGAGCCCTTGTGAGCATGCCTTCTGTCTCGATTGTGCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAGACGATCAAAATGATGGAAGGAATCCTCATATGTGCAGCTCCTCATTGTCTCAAATCTTTCTTGAAGAAGGCTGATTTTGAATCTCATATCCAAGACAGCCATGCTAACCTTCTTCGTCCCAATGCGGATAAAGATGAAGGAAATGAGTCGGAGGCACAGAGTGTTAGGCAATCCACAGCTTCAGATTCCACAGCTCGAGGTCCCCAAAGGCCAGTTTTTTCTCCTGGTTCAAATTCCCAACAACATGATCTGGAAGACAAAACTCGCCGACAGCCACCAAGGGAGCAACCACCTTCAAGACCAACACTGCAGCCCAAGCCACCATTTTTTGGCCAACAACATCACCCTTCAGATACCTTGTCTGGCTCTGTTGGAGGTATACAACAGGGCTTTCATCAACAAAGTTTTGACATGCAGCATCCCCCACAAGAACCTTCCCAGTTTTCTGACAGGCAGCAAGCAGTTGGTCCAGAGACCCCATTTCCTGAGTATCCAACAATGCACTCTGCACAACCTTCCAATATCCCCTCACAGGTTACTTCAAACCCAATGCTGAACCCTCCTATGCCATTTGGTTATCCCCCTTACCCACATGAACGAGCTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCGGCTTCTGATATAGGTGGGGACCAGAGTTCATTACTGGGTTTCCCACAAGGTGCCCCAAGTGGTCCAAATTTTCCTGGAAATTTTCCCCAGGCATGGAATGCAGGAATTGCTGGTGTGCCTTTTGAACAAGCACAGGGTGGTATGGTTGTGGATCCAAGGGATTCCAAAGGTATATTGGCACCACAGCCCATGCCCCTCCCACCACCGCCACCACCTCCACCTCACATGTCACATTTGAAACAGAACTACTATTCTGGTGAGCTTGGACATGATGCTCAGGGTTATGGATGGCAGCATGATAACCGTGATAGCTTTGGTGGCCAAGGCTAG 1320 0.4924 MLQIRLSKAPASEGSGGAKLSPVETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHANLLRPNADKDEGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKTRRQPPREQPPSRPTLQPKPPFFGQQHHPSDTLSGSVGGIQQGFHQQSFDMQHPPQEPSQFSDRQQAVGPETPFPEYPTMHSAQPSNIPSQVTSNPMLNPPMPFGYPPYPHERAQPFYAAPYDMPRQDSASDIGGDQSSLLGFPQGAPSGPNFPGNFPQAWNAGIAGVPFEQAQGGMVVDPRDSKGILAPQPMPLPPPPPPPPHMSHLKQNYYSGELGHDAQGYGWQHDNRDSFGGQG 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3943g00008 439 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Gabi3943g00008 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Gabi3943g00008 439 MobiDBLite consensus disorder prediction 391 407 - -
Gabi3943g00008 439 MobiDBLite consensus disorder prediction 280 295 - -
Gabi3943g00008 439 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Gabi3943g00008 439 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Gabi3943g00008 439 MobiDBLite consensus disorder prediction 152 295 - -
Gabi3943g00008 439 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Gabi3943g00008 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 429 IPR040383 GO:0016567|GO:0061630
Gabi3943g00008 439 MobiDBLite consensus disorder prediction 228 268 - -
Gabi3943g00008 439 MobiDBLite consensus disorder prediction 385 439 - -
Gabi3943g00008 439 MobiDBLite consensus disorder prediction 166 195 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3943g00008 1 436 C2H2 Transcription Factor Family AT5G01160 45.045 1.78e-110 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3943g00008 K15685 - gmx:100817582 793.497