Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3941g00005 ATGGGTGGTGCTGATCCTAACAAAGCATCATGTTATGAATCTTGTAATTCCAACAATAACACTAGTAAGTTGTACAAAGGGGTGAGGAAGAGAAAATGGGGAAAATGGGTATCTGAGATAAGGCTTCCTAATAGCCGTGAGCGTATATGGTTGGGGTCTTATGACACACAAGAGAAAGCTGCTAGGGCCTTTGATGCAGCCCTTTATTGTCTACGTGGTCGCCATGCTAGTTTCAATTTCCCTGATACACCTCTCAACTTGGAGATACATAATATTGTGGTTTTTCCTGGTGGAAACCAATCTCTTTCCCCACGTGAAATTCAAGAGGTTGCTGCTAAGTTTGCCAATGACCCACCATTGGAGACCCAAGAAGAAGAAGAAGAAGAACCATCAGAGTCACAACTTGGTGCTAATTCATTTGAGTTATTTGAATCCAATTCGAATGATGGGACTATGCAAGTGGACCACGGGGACATAAGGAACATTGATAGGACATTTCTGAACATGTTGGATGACTTGAATAATAATGGCGTTGTTGCTGGCTCCGATTTTGGTTTCTATTCTGGGCTACAAAATTTGCACTCGGGTGAGTTATTATATTCCTCTCAACCACCACCATTTTCTGAGGATGATGGGGAAGAAATTGAAGGTCATGATGCTTTTTCTAACCATTCATTCCTTTGGAGTTGGAACTTTTGA 699 0.4163 MGGADPNKASCYESCNSNNNTSKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRHASFNFPDTPLNLEIHNIVVFPGGNQSLSPREIQEVAAKFANDPPLETQEEEEEEPSESQLGANSFELFESNSNDGTMQVDHGDIRNIDRTFLNMLDDLNNNGVVAGSDFGFYSGLQNLHSGELLYSSQPPPFSEDDGEEIEGHDAFSNHSFLWSWNF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3941g00005 232 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Gabi3941g00005 232 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Gabi3941g00005 232 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Gabi3941g00005 232 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Gabi3941g00005 232 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Gabi3941g00005 232 Pfam AP2 domain 25 73 IPR001471 GO:0003700|GO:0006355
Gabi3941g00005 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 145 - -
Gabi3941g00005 232 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Gabi3941g00005 232 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Gabi3941g00005 232 FunFam Ethylene-responsive transcription factor 2 23 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3941g00005 Gabi-Chr3941 65660 66358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3941g00005 17 232 AP2-EREBP Transcription Factor Family AT1G19210 41.553 7.67e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3941g00005 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3941g00005 - - gmx:112999363 227.639