Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi393g00005 ATGGGTGAGAAAGATTATGGCTTGGGTTTGGGTTTGAGTTTGAGTTTGGGATGTGGAGAAAATGCAAATAATCAACCACCTTTGAAGGCAAATCTCATGCAAAAGCCTCCTCAATCGGTTCCAAACCAAAGGGGTTCCTTCAATAACTTGTTTCATTTTCATGATCGGAGCTCCGAGACGAGGTCGTTCCTCCGTGGAATAGACGTGAACTCAGCGCCGCCGTTGACGGCGGCGGTGGCGACTGCGTGCGACGACGAGAATGGGGTTTCGTCGCCGAACAGCACCATATCGAGTATCAGCGGGAAGAGGAGCGAGAGAGAAGGTAATGGAGACGAGAACGACGCTGCCGAGAGGGCCTCCTGTTCTCTAGGCGGAAGCGACGACGACGAAGGCGGAGGATGCGGCGGCGACGGCGACGGAGACACTTCAAGGAAGAAGTTGAGGTTGTCGAAGGAACAGTCCATGTTGCTTGAAGAAGCTTTCAAGGAACACAACACTCTGAATCCGAAACAAAAGCAAGCATTGGCAAAGCAATTGAATCTGAGGCCAAGACAAGTTGAGGTGTGGTTCCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGTGAATACTTGAAGAGATGCTGCGAGAATTTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTACAAGAGCTTAGGGCATTGAAATTATCCCCACAGCTCTACATGCACATGAACCCTCCCACAACTCTTACAATGTGCCCTTCATGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCCTCATCAACCACCATACCCCCTGCCCCGTCTCCGGCTAATCGCAACCCTTTAGGCCCTAACATCCAGCGGCCGGTGCCGGTCAACCCTTGGGCGGCAATGTCAATCCAACACCGGATCCGGCCATAA 924 0.513 MGEKDYGLGLGLSLSLGCGENANNQPPLKANLMQKPPQSVPNQRGSFNNLFHFHDRSSETRSFLRGIDVNSAPPLTAAVATACDDENGVSSPNSTISSISGKRSEREGNGDENDAAERASCSLGGSDDDEGGGCGGDGDGDTSRKKLRLSKEQSMLLEEAFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSSTTIPPAPSPANRNPLGPNIQRPVPVNPWAAMSIQHRIRP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi393g00005 307 Coils Coil 206 236 - -
Gabi393g00005 307 MobiDBLite consensus disorder prediction 86 103 - -
Gabi393g00005 307 Pfam Homeodomain 144 198 IPR001356 GO:0003677
Gabi393g00005 307 MobiDBLite consensus disorder prediction 83 145 - -
Gabi393g00005 307 SMART halz 200 243 IPR003106 GO:0006355|GO:0043565
Gabi393g00005 307 MobiDBLite consensus disorder prediction 263 295 - -
Gabi393g00005 307 SMART HOX_1 142 204 IPR001356 GO:0003677
Gabi393g00005 307 Pfam Homeobox associated leucine zipper 200 234 IPR003106 GO:0006355|GO:0043565
Gabi393g00005 307 MobiDBLite consensus disorder prediction 22 41 - -
Gabi393g00005 307 FunFam Homeobox-leucine zipper protein 18 133 205 - -
Gabi393g00005 307 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
Gabi393g00005 307 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Gabi393g00005 307 Pfam HD-ZIP protein N terminus 1 107 IPR006712 GO:0005634
Gabi393g00005 307 Gene3D - 136 205 - -
Gabi393g00005 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 274 - -
Gabi393g00005 307 CDD homeodomain 144 201 IPR001356 GO:0003677
Gabi393g00005 307 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981|GO:0006355
Gabi393g00005 307 SUPERFAMILY Homeodomain-like 128 201 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi393g00005 Gabi-Chr393 124498 127500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi393g00005 37 304 Homeobox Transcription Factor Family AT3G60390 63.309 3.61e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi393g00005 HD-ZIP_N 8.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi393g00005 K09338 - gmx:100798480 432.565