Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi393g00004 ATGTTTTCTACTTTGCGCCATCTCTGTACAAGCACCGGCACCAGCACCAGCACCAGCACCACCTCAAGAATCCCTTGGAGGTATAAGAAGCTTGCTGTGACACAAGCACAGCATGCCCTCACTGATTACCTTCATGCCACAAGGAGCATCCCTTATCCCTATGCTGACCAGATTGCAAAGAATTCCCTTCTCTCTCTCACCAATCTCATTTCAAAGGTCCCTTTTTCACCTTCAAATTTCTCCCAGAACCTTGACAAGTTCCTCAGGTACAACCCCATCAATGAATTTGAGTTTTTCTTTGAAAGCATTGGCATACATTATACTCAACTTCATGCTTTGTTGCCTCCCAACAAGTTCTTCTTTTCTGAAGATGGGTCCCTTCTGGATGCTGCTTGTGCTCTCTCTGAATTTGGGTTTCCCTGGGATAAGCTTGGGGTGTTGTATATGGAGAGTGGTTCCGTATTTAAAAGGAGTGCTTTAGAGTTGAAGGGTAGGCTTTGTTTGTTCAAAAGATATGGTTTTTGTAATGCACAAGTCACTGGGATATGTTTGGCTTTCCCTTTTGTTTTTTGTGAGGAGGAAGGCCAATTGGGTGCTCTGATTGATGGGTTGTTTTCTGATCTGAAAGTGGCTTTTTGGGATTTTGATTTGGCAGGTTCTGTTGAGGGGAATGTGGAGGCTTGGCATGAGGTGTGTAGGAAAATTAGGGTGTTTTACAAATTGAATGGTGACAAGGTTTTTAAGATAGGGGATCTCATTGGAAGGAATAAAAGTGTCATTCTTGAGCATGGAGAAGAGGAGTTGATTCAAAAGGTTGAGTATTTTTGTAGTTTTGGTGTCAAGAAGGAGGAAGTGGCACGGTTTATTCTCGAGGGCTCAGAATTGTTGAATCTTGATTTGGAAACGTCGGTGATTAATGTATTGAAGCTATTGAAACACCTTGGAATGAGTTCCAAAGATATTGAGGATGTCAAGAGGGATTATGCTCATGTGTTGGGAACAATAAAAATGGCTAATCTTCCTAATGTAATGAGGGCTTTGGGTTTACGGGAGTGGTTCTTTAATAAAATCAAAGATGGGAATCATCATTTGTTAGTGGGTTATATCACAAGCTATCCCAATGAACCCCAAGATAAATATTATCTTGGTGGTTTAGAGGCAGTTAGTGTTTCAAGAACCCCAGTTCACAATATGAATAAATTGAATTTCTTGCATGCATTGGGCTTTGGAGAAAATGCTTTGACCATGAATATCTTAACCGACTTGCATGGAACAAGTAGCGAGTTGCAAAAAAGATTTGATTGCCTTCTACATTCAGGTATTGAATTCTCAAAGCTGTGTAAGATAATCACAATTCGACCTAGGATTCTAAGCCAAAACCCTGAAATTATAGAACAAAAGATTAATTTCCTCTGTCGGGAAATGGGACACTCCTTAGAGCTTTTGGACATTTTTCCAGCATTCTTATGTTTTGACTTAGAGAAACGTATTAAGCCTAGGTATAGATTCCATATGTGGATTATGCAAAAGGGTCTGTGTGCCAAAAACTATTCCATTGCAAGCATGATTGCGACCAGTGACAAGAATTTTGTTGCTCGCATTTTTAAAATTCACCCAGCTGCTCCGAAACATTGGTTTGAGCAATTCTATAACAGCAAATTGCTAGTATGA 1671 0.4022 MFSTLRHLCTSTGTSTSTSTTSRIPWRYKKLAVTQAQHALTDYLHATRSIPYPYADQIAKNSLLSLTNLISKVPFSPSNFSQNLDKFLRYNPINEFEFFFESIGIHYTQLHALLPPNKFFFSEDGSLLDAACALSEFGFPWDKLGVLYMESGSVFKRSALELKGRLCLFKRYGFCNAQVTGICLAFPFVFCEEEGQLGALIDGLFSDLKVAFWDFDLAGSVEGNVEAWHEVCRKIRVFYKLNGDKVFKIGDLIGRNKSVILEHGEEELIQKVEYFCSFGVKKEEVARFILEGSELLNLDLETSVINVLKLLKHLGMSSKDIEDVKRDYAHVLGTIKMANLPNVMRALGLREWFFNKIKDGNHHLLVGYITSYPNEPQDKYYLGGLEAVSVSRTPVHNMNKLNFLHALGFGENALTMNILTDLHGTSSELQKRFDCLLHSGIEFSKLCKIITIRPRILSQNPEIIEQKINFLCREMGHSLELLDIFPAFLCFDLEKRIKPRYRFHMWIMQKGLCAKNYSIASMIATSDKNFVARIFKIHPAAPKHWFEQFYNSKLLV 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi393g00004 556 Gene3D Transcription termination factor 3, mitochondrial 61 212 IPR038538 -
Gabi393g00004 556 Gene3D Transcription termination factor 3, mitochondrial 293 550 IPR038538 -
Gabi393g00004 556 SMART mt_12 447 478 IPR003690 GO:0003690|GO:0006355
Gabi393g00004 556 SMART mt_12 250 281 IPR003690 GO:0003690|GO:0006355
Gabi393g00004 556 SMART mt_12 479 513 IPR003690 GO:0003690|GO:0006355
Gabi393g00004 556 SMART mt_12 286 317 IPR003690 GO:0003690|GO:0006355
Gabi393g00004 556 FunFam Transcription termination factor MTEF18, mitochondrial 385 545 - -
Gabi393g00004 556 Pfam mTERF 245 333 IPR003690 GO:0003690|GO:0006355
Gabi393g00004 556 Pfam mTERF 426 530 IPR003690 GO:0003690|GO:0006355
Gabi393g00004 556 PANTHER CGI-12 PROTEIN-RELATED 88 537 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi393g00004 Gabi-Chr393 102220 106025 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi393g00004 mTERF 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi393g00004 - - gsj:114418754 754.592