Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi393g00001 ATGTCTAGCAGGAGGTCACGGTCAAGACAAACAAGTAGTTCAAGGAATATCACTGACGATCAGATCAATGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCTGAGATTCGCGATAGGCGCTCTGACAAGGTTTCAGCTTCCAAGGTCTTGCAAGATACATGCAACTATATTAGAAGCTTACACAGGGAAGTGGACGACCTAAGCGAGCGTTTGGCTGAGCTCTTGGCTACAACAGACACAGCACAAGCTGCAATAATTAGAAACTTACTTATGCAATAA 279 0.4409 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQDTCNYIRSLHREVDDLSERLAELLATTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi393g00001 92 Gene3D - 18 88 IPR036638 GO:0046983
Gabi393g00001 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Gabi393g00001 92 CDD bHLH_AtPRE_like 17 77 - -
Gabi393g00001 92 MobiDBLite consensus disorder prediction 1 20 - -
Gabi393g00001 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Gabi393g00001 92 Coils Coil 57 84 - -
Gabi393g00001 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Gabi393g00001 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Gabi393g00001 92 FunFam Transcription factor ILI6 7 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi393g00001 Gabi-Chr393 59873 60774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi393g00001 17 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 80.519 4.02e-39 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi393g00001 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi393g00001 - - gmx:100527636 160.999