Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3925g00001 ATGGAGTGCGTGGTGCAAGCAGCGTTGAAGAGCAGTTTTAGAAAAGACATGACAATGAAATTCAGCCCTCAAACGCTCTTAGAGGAGTTGTCGTTTAACGTGCAGAGTGTCGACGACTTCATCGTAGACGACTTCTTCGACTTTTCACATGAACAAGTACTCCAAGAAGAAGAACCCCAACAACAAAACCATGATTCTGCCTCTGTTTCACTTCAACAGGAGAACCAACACAAGACCCACCAAATTTGCAACTCCTCATTCAACAATGGGTCTTTCCCAACAAGCGAACTCGGTGTTCCGGCTGAAGATGCTGCGAACTTGGAATGGTTGTCTCATTTTGTTGAAGATTCCTTCTCTGAATACTCTATTTCCTTCCCAACCAGAAACTTAACAGAAAATCTTGCAGCCAAAGCGCCTGAACCGGGAAACTCTGTTTCGGTTCAACTCTGTTTCAAAAATCCGGTTCCGGTCAAGGCTAGGAGCAAGAGAACCAGGACCGGGATTCGAGTCTGGCCTTTCAATTCCCCTTCTTTCACCGGTTCTTCTTCATGTTCTTCTTCAACCTCGAGCTCCACCACTCCATCTTCCTCTTCCTCCTCGTCACTCCCGGAGACCACCGTGACCACAAACCGGGTTTTCTCGGAGACGAAGTCGCCGGAGAAGAAGGCGAAGAGGAGGGCCGCGCTTGACGGCGGCGTGGAGAAGATTCCGCGGCGGTGCAGCCATTGCGGTGTCCAGAAGACCCCTCAGTGGCGAACCGGACCGCTCGGGGCGAAAACGCTGTGCAACGCTTGTGGGGTCCGGTTCAAGTCGGGTCGGTTATTACCCGAATACAGGCCCGCGTCTAGCCCCACTTTCTCGAGTGAATTGCACTCCAACCATCACCGTAAGGTGCTGGAGATGCGGCAGAAGAAGGAGGAAATGGTTGAACCGGATACCGGTTTGGCACTTTCTCCCGTGATTCCCGGTTTTTGA 975 0.5138 MECVVQAALKSSFRKDMTMKFSPQTLLEELSFNVQSVDDFIVDDFFDFSHEQVLQEEEPQQQNHDSASVSLQQENQHKTHQICNSSFNNGSFPTSELGVPAEDAANLEWLSHFVEDSFSEYSISFPTRNLTENLAAKAPEPGNSVSVQLCFKNPVPVKARSKRTRTGIRVWPFNSPSFTGSSSCSSSTSSSTTPSSSSSSSLPETTVTTNRVFSETKSPEKKAKRRAALDGGVEKIPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPASSPTFSSELHSNHHRKVLEMRQKKEEMVEPDTGLALSPVIPGF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3925g00001 324 SMART GATA_3 234 288 IPR000679 GO:0006355|GO:0043565
Gabi3925g00001 324 MobiDBLite consensus disorder prediction 178 214 - -
Gabi3925g00001 324 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Gabi3925g00001 324 MobiDBLite consensus disorder prediction 215 230 - -
Gabi3925g00001 324 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Gabi3925g00001 324 MobiDBLite consensus disorder prediction 54 75 - -
Gabi3925g00001 324 PIRSF Txn_fac_GATA_plant 10 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi3925g00001 324 Gene3D - 232 307 IPR013088 GO:0006355|GO:0008270
Gabi3925g00001 324 PANTHER GATA TRANSCRIPTION FACTOR 35 312 - -
Gabi3925g00001 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 297 - -
Gabi3925g00001 324 MobiDBLite consensus disorder prediction 178 230 - -
Gabi3925g00001 324 MobiDBLite consensus disorder prediction 59 75 - -
Gabi3925g00001 324 CDD ZnF_GATA 239 287 IPR000679 GO:0006355|GO:0043565
Gabi3925g00001 324 FunFam GATA transcription factor 231 314 - -
Gabi3925g00001 324 Pfam GATA zinc finger 240 274 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3925g00001 Gabi-Chr3925 11939 13318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3925g00001 6 315 C2C2-Gata Transcription Factor Family AT5G66320 52.134 7.44e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi3925g00001 GATA 4.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3925g00001 - - aprc:113869559 326.25