Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3921g00049 ATGCTTCAGCCTCGGTCCCTATATGTCAAGAACCTGAGTTTCAAGACAACAGATGAGAGTCTGAGGAAGCATTTTACTGAACACATGAAAGGAGGAAGAATTTTGAGTTTCAAGGTGCAGAAGCACTTGAAAAATGGGGAAAAAATTTCTACGGGATTTGGATTTCTTGAGTTTGACTCCACCGAGACAGCTACAAATGTTTGTAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCTCTTACTTTACAACTTTGTCATGTCAAGAATGACGGGCAAGTACGAAAGACAGTTGAGAAGGATAAGAGTTCTACAAAATTGCTTGTAAGAAATGTTGCTTTTGAGGCAACTAAGAAGGACCTGAGACAGTTGTTTAGCCCGTTTGGCCAGATTAAAAGCTTAAGGTTGCCAAAGAAGTTTGGAAGTCATAGAGGCTTTGCTTTCGTAGATTATGTTACTCAGCAGGAGGCACAAACTGCTCTTGATGCACTCTCAAAAACCCACCTGTATGGCAGGCGTCCGGTGATAGAGCGCGCGAAAGAAGGTGATAGTTTGGAAGAACTAAGGGCTCGCACAGCTGCTCAATTTAGTGAACAAAATGGATTTCAAAATTCTACTAAATTATTGAAGAAAAGGAAGCTCTTTGGATGA 651 0.4147 MLQPRSLYVKNLSFKTTDESLRKHFTEHMKGGRILSFKVQKHLKNGEKISTGFGFLEFDSTETATNVCRDLQGTVLDGHALTLQLCHVKNDGQVRKTVEKDKSSTKLLVRNVAFEATKKDLRQLFSPFGQIKSLRLPKKFGSHRGFAFVDYVTQQEAQTALDALSKTHLYGRRPVIERAKEGDSLEELRARTAAQFSEQNGFQNSTKLLKKRKLFG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3921g00049 216 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 99 201 - -
Gabi3921g00049 216 SUPERFAMILY RNA-binding domain, RBD 95 184 IPR035979 GO:0003676
Gabi3921g00049 216 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 1 97 - -
Gabi3921g00049 216 CDD RRM6_RBM19_RRM5_MRD1 105 179 - -
Gabi3921g00049 216 Gene3D - 96 206 IPR012677 -
Gabi3921g00049 216 Gene3D - 3 95 IPR012677 -
Gabi3921g00049 216 FunFam Multiple RNA-binding domain-containing protein 1 99 205 - -
Gabi3921g00049 216 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Gabi3921g00049 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 181 IPR000504 GO:0003723
Gabi3921g00049 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 88 IPR000504 GO:0003723
Gabi3921g00049 216 SMART rrm1_1 6 84 IPR000504 GO:0003723
Gabi3921g00049 216 SMART rrm1_1 106 177 IPR000504 GO:0003723
Gabi3921g00049 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 81 IPR000504 GO:0003723
Gabi3921g00049 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3921g00049 Gabi-Chr3921 685182 687565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3921g00049 6 210 Eukaryotic Initiation Factors Gene Family AT4G34110 25.822 1.84e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3921g00049 K14787 - cit:102613427 339.732