Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3921g00032 ATGCCTCCTCCGCAGCCCCGTCACCTCCGGCAGCCGAATCACCGGCTGGACCCGAAAATATGGCGTGCGTGCGCCGGCGCAGCTGTCCAAATCCCGAGGGTGCATTCTAGGGTTTACTACTTCCCCCAGGGCCACGTGGAGCACGCTTCTCACTCTCCTCACTACCTATCGCATGTCCTCCGTTCACCACCCTTCATTCCCTGCCGCGTCTCCGCCGTCGACTTCCTCGCCGATCCCGTCTCCGACGAGGTCTTCGCCAAGATCCTCCTCACTCCTATCGCCGACCTTTTCAACGAACCACCCGAAGAACTCGGCGACAGTTACGGCGACAAGGTCGTCTCCTTCGCCAAGATTCTCACGCCCTCCGACGCCAACAATGGCGGCGGGTTCTCCGTTCCCAGGTTCTGCGCTGACTCCATATTCCCGAAGCTCGACTTCGATGCCGACCCGCCTGTCCAGGTCCTTTCCGTCACCGACGTTCACGGCGTCTCGTGGCAGTTCCGCCACATTTACCGCGGGACTCCCCGGCGGCACCTGCTCACCACCGGCTGGAGCAAGTATGTGAACCACAAGAAGCTCGTCGCCGGCGATTCCGTGGTTTTCATGAAGAACTCGAGGGGGGAGATGTTCGCCGGGATTCGTAGGTCCTTGCGATTCGCCGGTGCTGGGAGCAGCAAGGTTGAAGATGAGCAGCAGAAGGTGGTTGCGTCGGCGGTGGAATCGGCGGCGCAGAAGGTGCCGTTTGAGGTTGTGTATTATCCGAAGGCTGGTTGGTCGGATTTCGTGGTGAAGGCTGAGGTTGTGGAGGAAGCAATGAAGACCTTGTGGTGTCCTGGAATGAGAGTGAAGATGTCTATGGAGACTGAGGATTGTTCCAGGATGACATGGTTTCAGGGGACAGTGTCTTCTGTCTCTGCTCCTGATAATGGGCCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGGGTCAGTCCTTGGCAAGTTGAACTTGTTTCCTTCACGCCTGCACTTCATAGAACATTCCCCCCAACAAAAAAGTTTAGATTTGCTCAGGGTTCTGGGCTGTTAAGTGATAGAGAGGGAGATCCCTTTTTTCCTATGACAGTGTTCCCGAATTCAACAATTGGACACTTGAATCAAACATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTCTTTTCTGCATCAAGTTTTTCTAACTTTTTAAATGATAACTCTTGTCTGCATATGGGTACTAGTTCATTAGGGAACGATACAGTGCCAAGGTCAAGAACTGTGCCAACAGAGCTAAACATTGGCAGTTCTCAATCTGATGAATTGTCACCAGATAGGCCAGATAGCCAGAGTAGTTTGCATTCCTTTGGCACAGAGTTTTTTGGGACCCACAACAGCATGACCACTAAATTTGGTTCTGGTTCAATTCTGCTATTTGGTAAGATCATACAGCCGGTTCAAAGTGGTTTGCGTGATGCCGACTGCATGAGAGATCACGGCAGTAAGGGCTGCAATGAAACTGAAGGCATTGACAACCCACTAGATAATTCTGTGACTTACTCAAAATTGCACAGCAGGCTTGATGTCCAATGTCAACGAGCCCCACCAGTTGAGGCATCTTATTTTTGA 1668 0.524 MPPPQPRHLRQPNHRLDPKIWRACAGAAVQIPRVHSRVYYFPQGHVEHASHSPHYLSHVLRSPPFIPCRVSAVDFLADPVSDEVFAKILLTPIADLFNEPPEELGDSYGDKVVSFAKILTPSDANNGGGFSVPRFCADSIFPKLDFDADPPVQVLSVTDVHGVSWQFRHIYRGTPRRHLLTTGWSKYVNHKKLVAGDSVVFMKNSRGEMFAGIRRSLRFAGAGSSKVEDEQQKVVASAVESAAQKVPFEVVYYPKAGWSDFVVKAEVVEEAMKTLWCPGMRVKMSMETEDCSRMTWFQGTVSSVSAPDNGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSFTPALHRTFPPTKKFRFAQGSGLLSDREGDPFFPMTVFPNSTIGHLNQTLLSYDTFPAGMQGARHDLFSASSFSNFLNDNSCLHMGTSSLGNDTVPRSRTVPTELNIGSSQSDELSPDRPDSQSSLHSFGTEFFGTHNSMTTKFGSGSILLFGKIIQPVQSGLRDADCMRDHGSKGCNETEGIDNPLDNSVTYSKLHSRLDVQCQRAPPVEASYF 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3921g00032 555 Pfam B3 DNA binding domain 115 215 IPR003340 GO:0003677
Gabi3921g00032 555 FunFam Auxin response factor 113 217 - -
Gabi3921g00032 555 MobiDBLite consensus disorder prediction 433 467 - -
Gabi3921g00032 555 CDD B3_DNA 114 210 IPR003340 GO:0003677
Gabi3921g00032 555 Gene3D - 112 217 IPR015300 -
Gabi3921g00032 555 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 497 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3921g00032 555 SMART B3_2 115 216 IPR003340 GO:0003677
Gabi3921g00032 555 SUPERFAMILY DNA-binding pseudobarrel domain 108 221 IPR015300 -
Gabi3921g00032 555 Gene3D - 276 343 - -
Gabi3921g00032 555 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Gabi3921g00032 555 Pfam Auxin response factor 238 315 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3921g00032 Gabi-Chr3921 502419 506188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3921g00032 13 521 B3 DNA Binding Superfamily AT1G77850 47.415 1.37e-160 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3921g00032 B3 1.3e-20 CL0405