Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3921g00029 ATGAATCACATACCTCGAATTTTCGGTCATAGAAAGCAAGATAAGGGCATGGACCCGAAGAAGACCCGAAGAAAACAACCGAAGCTCGAGCGTCGCAATGCCGTAAAGTACTCCAACTACGACGCCGGAGCTTTGCCGTCGTCGTCGTCGATGGACTCCTCCGGTTCCGCCTCCGCCGCGCCGCTCTACACCCGATCCATGGATTTCTACGACCGGACTAGCTTCCGAATCGAAGGAGTCGAGGGGGAATTCGACCGGATTTGCCGGAGCCTTGGGCTCTCCGGGCCGGAGGATTTCTCCATCCCGGCGGCGGCGTGGGAGGCCATGAAGGTTCGGTCTTCGTCGGATATTTTGCCGAGGCTTAAGCTCAACGATTTGGATGAAGCACGTGAGAAAGAGGAAATAGGAGTAGCAGAGTGTGAAGATAAGGTTCCGACGGTTAGGGTTTTTGATGAGTGTACCGTTCCTGAGACCAGTGGTTGCTGCACCGCCGGCAGCGGCGGCTGCGGCGGCGGTATCAAGGGGGTTCGGCCTCCGATGCTTAAGCCGCCTCCGGGGATTAGGGTTTCGGTCGTCGATAACACGTGCTCCACGTGGGACCTTTTGAGGGATTTTGCTCCGGGAGGGGAAGGAGGAAAGGAAAATTACGGGGTGTTGAGTGCTTCAGATGATGATGATGATGATCGTGAAGAGAAGGAAAAAAAAGGAGAAGAAGAAGAAGAAGAAGAAGGGGGAGTTGGTGGGGTTAGATTGAAGAGAGAAGAGGAGGAAAATGCAGCAAGGATTGCGGATATTGTTAGTGATCTTTCGGGTTTCACTACGTCAAACGAAGATGATTCCTCAAGCACTACCACGGATCCTAGGTCCAATAATATATCTCCTAACACGAGAATCAAGCGTATTATTACCCCCGGCAGCTGGCAAAAGGGTGAGCTTTTGGGGCGTGGTTCCTTTGGCTCTGTTTATGAAGGAATTTCTGAAGATGGAAACTTTTTTGCTGTAAAAGAAGTTTCGCTGCTTGATCAAGGGAGTCAGGGAAAGCAAAGTATCTATCAACTGGAGCAGGAGATTGAGCTCTTGAGTCAGTTTGAACATGAGAATATAGTTAAATACATTGGGACTGAAATGGATGAATCAAACCTGTATATCTTTCTTGAGCTTGTAACCAAAGGTTCCCTTGCAAACCTCTACCGGCAGTATAAACTTCGAGATTCCCAAGTATCCTCCTATACAAGACAGATTTTGCATGGTCTAAAGTATCTTCATGATCGAAATATTGTTCACAGGGATATTAAATGTGCAAATATTTTGGTGGATGCCAATGGATATGTCAAGCTTGCAGATTTTGGATTGGCAAAGGCGATCAAATTGAATGATGTTAAATCTTGCAAGGGAACTGCATTCTGGATGGCCCCGGAGGTTGTAAAAGGAAAGAATAAAGGTTATGGGCTTCCAGCTGATATATGGAGTCTGGGATGCACTGTATTGGAGATGTTAACAGGCAAAATTCCGTACTCTCATTTGGAATGCATGCAGGCGTTGTTTAGAATTGGAAAAGGTGAACCACCTCCTGTGCCTGATTCTCTTTCGATAGATGCTCGAGATTTCATCCTGCAATGTCTAAAAGTTAATCCAGAAGATCGTCCCACTGCTGCTCAACTCTTAAACCATACATTTGTCCAAAGGCCACTTTCCCAGTCTTCTGGCTTTGCATCTCCTTATATTCCCAGAAGAAGGGGCTAA 1743 0.475 MNHIPRIFGHRKQDKGMDPKKTRRKQPKLERRNAVKYSNYDAGALPSSSSMDSSGSASAAPLYTRSMDFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFSIPAAAWEAMKVRSSSDILPRLKLNDLDEAREKEEIGVAECEDKVPTVRVFDECTVPETSGCCTAGSGGCGGGIKGVRPPMLKPPPGIRVSVVDNTCSTWDLLRDFAPGGEGGKENYGVLSASDDDDDDREEKEKKGEEEEEEEGGVGGVRLKREEEENAARIADIVSDLSGFTTSNEDDSSSTTTDPRSNNISPNTRIKRIITPGSWQKGELLGRGSFGSVYEGISEDGNFFAVKEVSLLDQGSQGKQSIYQLEQEIELLSQFEHENIVKYIGTEMDESNLYIFLELVTKGSLANLYRQYKLRDSQVSSYTRQILHGLKYLHDRNIVHRDIKCANILVDANGYVKLADFGLAKAIKLNDVKSCKGTAFWMAPEVVKGKNKGYGLPADIWSLGCTVLEMLTGKIPYSHLECMQALFRIGKGEPPPVPDSLSIDARDFILQCLKVNPEDRPTAAQLLNHTFVQRPLSQSSGFASPYIPRRRG 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3921g00029 580 MobiDBLite consensus disorder prediction 7 24 - -
Gabi3921g00029 580 MobiDBLite consensus disorder prediction 1 58 - -
Gabi3921g00029 580 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 188 568 - -
Gabi3921g00029 580 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Gabi3921g00029 580 Pfam Protein kinase domain 308 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3921g00029 580 MobiDBLite consensus disorder prediction 210 295 - -
Gabi3921g00029 580 MobiDBLite consensus disorder prediction 42 58 - -
Gabi3921g00029 580 Gene3D Transferase(Phosphotransferase) domain 1 305 573 - -
Gabi3921g00029 580 MobiDBLite consensus disorder prediction 268 295 - -
Gabi3921g00029 580 SMART serkin_6 307 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3921g00029 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Gabi3921g00029 580 SUPERFAMILY Protein kinase-like (PK-like) 284 565 IPR011009 -
Gabi3921g00029 580 MobiDBLite consensus disorder prediction 239 262 - -
Gabi3921g00029 580 Coils Coil 123 143 - -
Gabi3921g00029 580 MobiDBLite consensus disorder prediction 221 238 - -
Gabi3921g00029 580 ProSiteProfiles Protein kinase domain profile. 307 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3921g00029 580 FunFam Mitogen-activated protein kinase 1, putative, expressed 305 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3921g00029 Gabi-Chr3921 449163 456574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3921g00029 173 564 MAP Kinase Kinase Kinase AT4G08500 63.104 1.21e-151 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi3921g00029 Pkinase 2.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3921g00029 K13414 - gmx:100819177 800.431