Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3921g00028 ATGGCGGCTTCGGTTGACAACCGTCAATACAGTGTCCTCGAACCCCACATAAACGGCGTCGTTCGTACCGCCACCGCCACCCACCGCTCCGATTTCAAACCACCTTTGCTTTTGGATTTGGATTCCTCCAGCAGCGACGACGAACAAAACGACGACGCTTCCAACCTTAAAGACCTCATACGAAAGGCGAACGCGGAGGTGGAGCCCTCAGTGTTGGACCCACGCGACGGCGGAACCGCCGATCACTGGGTCCACCGCAACGCCTCCATGCTCCGCCTCACAGGGAAACACCCCTTCAACTCAGAGGCACCACTCCAACGCCTCATGCACCACGGATTCATCACCCCGGTTCCACTCCACTACGTCCGCAACCACGGTCAAGTCCCAAAGGCTCGCTGGGAGGACTGGACCATCGAGGTCACCGGTTTAGTCAAGCGGCCCGACCGGTTCACCTTGGACCGGCTCATCCGCGAGTTCCCAAGCCGCGAGTTTCCCGCGACTCTGGTCTGTGCTGGGAACCGCCGCAAGGAGCAGAGCATGGTGAAGGAAATCATCGGGTTCAACTGGGGCGCCGCCGCGGTCTCCACCTCGGTGTGGCGCGGCGTTCCTCTCCGGCAAGTGCTACGGCGGTGTGGGATCTACGCGCGGACGAAGGGTGCGCTTCATGTTTGCTTCGAGGGTGCTGAGGATCTCCCAGGGGGTGGTGGGTCCAAGTATGGAACGAGCATAAAGAGGGAGATTGGAATGGATCCTTCGCGTGACATCATCATCGCTTACATGCAAAACGGTGAGCTTTTGGCGCCGGATCATGGGTTCCCCGTTCGCATGATCATACCCGGTTTCATCGGTGGCCGCATGGTGAAATGGCTCAAACGTATCGTCGTTACTACAGAGGAGAGTGACAGTTATTACCATTACAAGGACAATAAAGTACTTCCCTCCCACGTTGATGCTGAACTTGCCAATGCTGAAGCCTGGTGGTACAAGCAAGAGTATATAATCAACGAGCTCAACATAAACTCGGTGATAACAACGCCTTGTCATGAGGAGATCTTGCCCATCAACTCATGGACTACGCAGAGGCCTTATGTACTTAAAGGCTACGCATATTCCGGGGGTGGAAGGAAAGTGACACGAGTTGAGGTAACAGTGGACGATGGAAATACGTGGTACGTGTGCACGTTGGACCACCCTGAGAAACCCAACAAATATGGCAAGTACTGGTGTTGGTGCTTCTGGTCATTGGAGGTGGAGGTGCTGGACCTTCTTGCGGCCAGAGAGATTGCTGTCCGCGCGTGGGACGAGGCCCTCAACACCCAGCCTGAGAACCTCATTTGGAATCTTACGGGCATGATGAACAACTGCTGGTTCAAGGTGAAAACCAATGTGTGCAAGCCACACAAGGGTGAGATTGGCATAGTGTTTGAACATCCAACCCAACCAGGTAACCAATCTGGTGGTTGGATGGCAAAGGAAAGACACCTCGAGAAATCACAAGAGCCAGACCCAACCCTCAAGAAGAGTGTCTCAACGCCATTCATGAACACCACCTCAAAAATGTACTCCATGTCCGACGTTAAAAAACACACCAACCCCGATTCCGCTTGGATCATCGTCCACGGCCACGTCTACGATTGCACCCGCTTCCTCAAAGATCACCCCGGCGGAACCGACAGCATCCTCATCAACGCCGGCACCGACTGCACGGAGGAGTTCGACGCCATCCATTCCGACAAAGCCAAGAAAATGATCGAAGATTACAGAATCGGCGAGCTCATGACCACAGGCTACACCTCAGACACATCATCGCCAAATAACTCCGTGCATGGAAACTCTGACACAATCCATTTAGCCCCCATTAAGGAAATCATCACAACACCACTTCATAACGTAGCTCTTAACCCACGCGAGAAAATCCCATGCAAGCTCGTGTCCAAAACTTCCATTTCCCACAATGTGATACTCTTCCGTTTTGCGTTACCATTCGAGGACCAAATATTGGGGTTGCCAGTGGGAAAGCACATATTCTTATGTGCCACAATAGACGAGAAGCTATGCATGCGAGCCTACACTCCAACGAGCAGCGTTGATGAAGTGGGGTACTTTGATTTAGTAGTCAAGGTTTACTTAAAAAACGTGCACCCCAAGTTCCCTAATGGTGGTCTCATGTCTCAGCACTTGGATTCTCTACCTATTGGTTCTTTCTTGGACGTGAAAGGTCCACTAGGTCACATCGAATACACTGGTAGAGGCAACTTTTTGGTTCACGGAAAGCACAAGTTTGCAAAGAGGCTAGCCATGTTAGCTGGTGGGACTGGAATCACACCCATTTACCAAGTGGCTCAAGCGATTCTTAAGGACCCCGAGGACCACACGGAAATGAACGTGGTGTATGCAAACCGCACTGAGGATGATATATTGCTAAGGGATGAACTCGATGCGTGGGCGAAGAATTTTGCACGGTTTAAGGTGTGGTACGTGGTGCAAGAAAGCAAAAGGGAAGGGTGGGAATACAGTGTGGGGTTCGTCACGGAGAGTATCCTGAGGGAGCATGTTCCAGAGGCATCAGAGGATACCTTGGCATTAGCTTGTGGTCCACCACCTATGGTTCAGTTTGCGGTGCAGCCCAATTTGGAGAAAATGGGGTATGACATCAAGAACAATTTGCTGTTGTTTTAG 2679 0.5218 MAASVDNRQYSVLEPHINGVVRTATATHRSDFKPPLLLDLDSSSSDDEQNDDASNLKDLIRKANAEVEPSVLDPRDGGTADHWVHRNASMLRLTGKHPFNSEAPLQRLMHHGFITPVPLHYVRNHGQVPKARWEDWTIEVTGLVKRPDRFTLDRLIREFPSREFPATLVCAGNRRKEQSMVKEIIGFNWGAAAVSTSVWRGVPLRQVLRRCGIYARTKGALHVCFEGAEDLPGGGGSKYGTSIKREIGMDPSRDIIIAYMQNGELLAPDHGFPVRMIIPGFIGGRMVKWLKRIVVTTEESDSYYHYKDNKVLPSHVDAELANAEAWWYKQEYIINELNINSVITTPCHEEILPINSWTTQRPYVLKGYAYSGGGRKVTRVEVTVDDGNTWYVCTLDHPEKPNKYGKYWCWCFWSLEVEVLDLLAAREIAVRAWDEALNTQPENLIWNLTGMMNNCWFKVKTNVCKPHKGEIGIVFEHPTQPGNQSGGWMAKERHLEKSQEPDPTLKKSVSTPFMNTTSKMYSMSDVKKHTNPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMIEDYRIGELMTTGYTSDTSSPNNSVHGNSDTIHLAPIKEIITTPLHNVALNPREKIPCKLVSKTSISHNVILFRFALPFEDQILGLPVGKHIFLCATIDEKLCMRAYTPTSSVDEVGYFDLVVKVYLKNVHPKFPNGGLMSQHLDSLPIGSFLDVKGPLGHIEYTGRGNFLVHGKHKFAKRLAMLAGGTGITPIYQVAQAILKDPEDHTEMNVVYANRTEDDILLRDELDAWAKNFARFKVWYVVQESKREGWEYSVGFVTESILREHVPEASEDTLALACGPPPMVQFAVQPNLEKMGYDIKNNLLLF 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3921g00028 892 Pfam Cytochrome b5-like Heme/Steroid binding domain 523 592 IPR001199 -
Gabi3921g00028 892 MobiDBLite consensus disorder prediction 33 52 - -
Gabi3921g00028 892 Pfam Oxidoreductase NAD-binding domain 767 873 IPR001433 GO:0016491
Gabi3921g00028 892 Gene3D - 513 596 IPR036400 -
Gabi3921g00028 892 Gene3D - 743 892 IPR039261 -
Gabi3921g00028 892 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 636 748 IPR017927 GO:0016491
Gabi3921g00028 892 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 516 597 IPR036400 -
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 113 129 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 444 457 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 406 416 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 91 105 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 365 379 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 250 266 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 177 189 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 379 391 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 334 346 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 166 177 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 267 280 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 283 296 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 192 207 IPR008335 GO:0016491
Gabi3921g00028 892 PRINTS Eukaryotic molybdopterin domain signature 431 443 IPR008335 GO:0016491
Gabi3921g00028 892 Pfam Oxidoreductase FAD-binding domain 641 747 IPR008333 -
Gabi3921g00028 892 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 74 334 IPR036374 -
Gabi3921g00028 892 Pfam Mo-co oxidoreductase dimerisation domain 332 463 IPR005066 GO:0016491|GO:0030151
Gabi3921g00028 892 Gene3D - 78 327 IPR036374 -
Gabi3921g00028 892 PRINTS Cytochrome B5 signature 553 567 IPR001199 -
Gabi3921g00028 892 PRINTS Cytochrome B5 signature 580 592 IPR001199 -
Gabi3921g00028 892 PRINTS Cytochrome B5 signature 543 553 IPR001199 -
Gabi3921g00028 892 PRINTS Cytochrome B5 signature 568 575 IPR001199 -
Gabi3921g00028 892 CDD cyt_b5_reduct_like 641 892 - -
Gabi3921g00028 892 FunFam NADH-cytochrome b5 reductase 627 742 - -
Gabi3921g00028 892 SUPERFAMILY E set domains 336 463 IPR014756 -
Gabi3921g00028 892 Gene3D - 336 510 - -
Gabi3921g00028 892 PIRSF Nitr_rd_NADH 6 891 IPR012137 GO:0006809|GO:0042128|GO:0050464
Gabi3921g00028 892 Pfam Oxidoreductase molybdopterin binding domain 125 304 IPR000572 -
Gabi3921g00028 892 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 736 886 IPR039261 -
Gabi3921g00028 892 PRINTS Cytochrome B5 reductase signature 733 747 - -
Gabi3921g00028 892 PRINTS Cytochrome B5 reductase signature 688 695 - -
Gabi3921g00028 892 PRINTS Cytochrome B5 reductase signature 860 868 - -
Gabi3921g00028 892 PRINTS Cytochrome B5 reductase signature 804 815 - -
Gabi3921g00028 892 PRINTS Cytochrome B5 reductase signature 667 678 - -
Gabi3921g00028 892 PRINTS Cytochrome B5 reductase signature 766 785 - -
Gabi3921g00028 892 FunFam Nitrate reductase 514 595 - -
Gabi3921g00028 892 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 549 556 IPR018506 GO:0020037
Gabi3921g00028 892 FunFam Nitrate reductase 336 512 - -
Gabi3921g00028 892 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 142 177 IPR022407 GO:0043546
Gabi3921g00028 892 SUPERFAMILY Riboflavin synthase domain-like 631 748 IPR017938 -
Gabi3921g00028 892 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 792 801 IPR001709 GO:0016491
Gabi3921g00028 892 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 552 562 IPR001709 GO:0016491
Gabi3921g00028 892 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 766 785 IPR001709 GO:0016491
Gabi3921g00028 892 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 804 815 IPR001709 GO:0016491
Gabi3921g00028 892 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 860 868 IPR001709 GO:0016491
Gabi3921g00028 892 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 836 852 IPR001709 GO:0016491
Gabi3921g00028 892 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 688 695 IPR001709 GO:0016491
Gabi3921g00028 892 CDD eukary_NR_Moco 76 461 - -
Gabi3921g00028 892 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 518 593 IPR001199 -
Gabi3921g00028 892 FunFam Nitrate reductase [NADH] 743 892 - -
Gabi3921g00028 892 Gene3D Translation factors 628 742 - -
Gabi3921g00028 892 PANTHER SULFITE REDUCTASE 66 466 - -
Gabi3921g00028 892 SMART Cyt_b5_2 521 593 IPR001199 -
Gabi3921g00028 892 FunFam Nitrate reductase 77 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3921g00028 Gabi-Chr3921 430492 435336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3921g00028 631 883 NADPH P450 reductases AT5G17770 41.016 1.71e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3921g00028 K10534 - gmx:100813471 1539.63