Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3921g00013 ATGCGAAAGCATAGAGTGGCAGTCTTATTTTTGGATAGAAAGGTCGATGAGTTGGACAAAGCAATCGCTGTGGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAATGGAGCTTGAAAGCCGGAGGAAATGGACAAGCAGTGCTCGTACTCAGGTTGGCACAGTGAAGAAAGCAGTGGAAGCTGGAAAGGGCTCAAGTTCAACAAGCCATGCTAGTGCAAATGGGATGCACCGAGAACTAATGAGACTACCAAATTCCCATCAAAATGATACATCCAGGCAGTATGCTGCCCATGATAATGATGATTTCATACAATCAGAATCAGATAGACAGATGCTTCTTATAAAGAAACAGGATGAGGAGTTGGATGAGCTTACTGTAAGTGTGCAAAGAATTGGGGGTGTTGGACTTACAATACATGAAGAACTCCTTGGACAGGAAAGGATTATAGATGATTTGGGTGCTGAGATGGAAAGTACATCGAATCGTCTAGATTTTGTCCAAAAGAAAGTGGCAATGGTTATGAAGAAGGCTGGTGCGAAGGGTCAAATCATGATGATATTGGGTTTGTTGGCTCTGTTCGTTTTCCTCTTTATCTTAGTATTCTTCACCTAG 618 0.4239 MRKHRVAVLFLDRKVDELDKAIAVASRDPSWYGIDEMELESRRKWTSSARTQVGTVKKAVEAGKGSSSTSHASANGMHRELMRLPNSHQNDTSRQYAAHDNDDFIQSESDRQMLLIKKQDEELDELTVSVQRIGGVGLTIHEELLGQERIIDDLGAEMESTSNRLDFVQKKVAMVMKKAGAKGQIMMILGLLALFVFLFILVFFT 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3921g00013 205 Gene3D - 120 184 - -
Gabi3921g00013 205 Pfam Syntaxin 6, N-terminal 12 57 IPR015260 GO:0016020|GO:0048193
Gabi3921g00013 205 SUPERFAMILY SNARE fusion complex 111 175 - -
Gabi3921g00013 205 Pfam SNARE domain 150 201 IPR000727 -
Gabi3921g00013 205 Gene3D - 5 63 - -
Gabi3921g00013 205 SUPERFAMILY t-snare proteins 12 60 IPR010989 GO:0016020|GO:0016192
Gabi3921g00013 205 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 113 175 IPR000727 -
Gabi3921g00013 205 FunFam syntaxin-61 isoform X1 116 177 - -
Gabi3921g00013 205 SMART tSNARE_6 108 175 IPR000727 -
Gabi3921g00013 205 CDD SNARE_Qc 116 173 - -
Gabi3921g00013 205 PANTHER GOLGI SNARE BET1-RELATED 71 203 - -
Gabi3921g00013 205 Coils Coil 151 171 - -
Gabi3921g00013 205 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3921g00013 Gabi-Chr3921 259394 263662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3921g00013 6 205 SNARE and Associated Proteins AT1G28490 69.000 2.30e-97 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3921g00013 K08500 - gmx:100787129 279.641