Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3921g00007 ATGGAGCATATGACAAGAGTTAATGATGCTGCAAATGATGAAAACGGGTTACTCGCAATGATTGGAAGTAGCGAAGGAGGCAATGGTGGTGGTGGTGAGGGTGGTGGTGGTGATGGTGGTGGCCGTGTGGATGATGTTGCTCTGAAGAAGGGTCCTTGGACAACCGCAGAGGATGCTATTCTGATAGATTATGTAACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAATACAGGGTTGGCTCGATGTGGCAAGAGTTGTAGGCTCAGATGGGCTAACCATTTGCGACCCAATTTAAAGAAAGGTGCTTTCTCCCCTGAAGAAGAGAAACTCATTGTTGACCTTCATGCACAGTTTGGCAACAAATGGGCTCGAATGGCTGCTTTGTTACCTGGGAGAACAGACAATGAAATCAAGAACTATTGGAACACAAGGATCAAGCGCCGCCAAAGACAAGGACTTCCTCTGTATTCAGATGACCATGATCATCCCACAACACCAACCACACCCACTACCCCTTCAACCCCACCAGGATCAAACCCAAACACTGCCCCAAAGTTTGAGTTTTTTCATCAGAACCACCATCATAACCCTTTGTCTCCAACAGCAAACCTTCGTTCTCCTCTCTCTTCATCATCATTCCAACAAAGACCACACTCTTATTCCCCTTACACTTTCTTGGACCCTGCACCTTTACCTTTGTCCTCATCTTCACCTTCCCCTCTCTCCTTCACTTTCCAAAGACCTGCACCATTGCTAAGTAACCCACTTCGCTTCAAGCGTTACCGTCCCTCTTCAAGCCACAACGTTCAGTTTCCTTCTATCAATGATCATCCAATCACAACCCAGTTGCATGATGTTGATGGATTCAGGTTCCCAGTTCAGCACAACACAAGTTTTTCTCAGTATTTTCAGACCCCATTATTAGATTCCGATCGAGGGGTTTCTTCTTCCTCTTCAGCTTTCCAAAACAAGTCGGAGTTCCCTTCAAACCAATTTTCAAAACCAACACAAGAGCCAGATACTAAGCTTGATAATCAGTTCAATGATCATGCTTTCCATAACAGTAGTGGGATGCTTGGGGATCTGCTATTGGAAGCTCAAGCATTGGCATCTGGCCAAAATTCAAAGAAACGAAGTTACTTGAGTTTGAATGAAGGAAATGATGTGTTTGATGGATGCCAAAGCTTTGACGACTTTCCACTTAGCTCTTTTTATTGGTCTTCTACTTCTACTTCAGGACAAAAACCAAAGGAAGAAGCACCTGACATGAGCAGATTCACAAACGAGGACTTATCATCACTGCTTACTGTAATGCCTTCCACTACGCAGGGTCAGGATTGGCATAATAACAATGCACATGAAGTCTCTCATGTCCAATCTTCTGGAGGTGTCATAACAGATGACAATTTTGAACATGATATAAAGCCCTTGTTTCCTCTCACCAACACAACAAACCATAATGAAAACCAGGGTTGCTACTCTTGGGATAATCTATCTGGTCTCTGCTAA 1518 0.4414 MEHMTRVNDAANDENGLLAMIGSSEGGNGGGGEGGGGDGGGRVDDVALKKGPWTTAEDAILIDYVTKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVDLHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDHDHPTTPTTPTTPSTPPGSNPNTAPKFEFFHQNHHHNPLSPTANLRSPLSSSSFQQRPHSYSPYTFLDPAPLPLSSSSPSPLSFTFQRPAPLLSNPLRFKRYRPSSSHNVQFPSINDHPITTQLHDVDGFRFPVQHNTSFSQYFQTPLLDSDRGVSSSSSAFQNKSEFPSNQFSKPTQEPDTKLDNQFNDHAFHNSSGMLGDLLLEAQALASGQNSKKRSYLSLNEGNDVFDGCQSFDDFPLSSFYWSSTSTSGQKPKEEAPDMSRFTNEDLSSLLTVMPSTTQGQDWHNNNAHEVSHVQSSGGVITDDNFEHDIKPLFPLTNTTNHNENQGCYSWDNLSGLC 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3921g00007 505 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 29 472 - -
Gabi3921g00007 505 Gene3D - 49 102 - -
Gabi3921g00007 505 CDD SANT 52 97 IPR001005 -
Gabi3921g00007 505 SMART sant 102 150 IPR001005 -
Gabi3921g00007 505 SMART sant 49 99 IPR001005 -
Gabi3921g00007 505 MobiDBLite consensus disorder prediction 317 349 - -
Gabi3921g00007 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 152 IPR017930 -
Gabi3921g00007 505 MobiDBLite consensus disorder prediction 19 43 - -
Gabi3921g00007 505 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Gabi3921g00007 505 FunFam MYB-related transcription factor 49 102 - -
Gabi3921g00007 505 FunFam Transcription factor GAMYB 105 151 - -
Gabi3921g00007 505 MobiDBLite consensus disorder prediction 197 224 - -
Gabi3921g00007 505 SUPERFAMILY Homeodomain-like 48 144 IPR009057 -
Gabi3921g00007 505 CDD SANT 105 146 IPR001005 -
Gabi3921g00007 505 Pfam Myb-like DNA-binding domain 50 97 IPR001005 -
Gabi3921g00007 505 Pfam Myb-like DNA-binding domain 103 146 IPR001005 -
Gabi3921g00007 505 Gene3D - 105 151 - -
Gabi3921g00007 505 MobiDBLite consensus disorder prediction 157 224 - -
Gabi3921g00007 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 97 IPR017930 -
Gabi3921g00007 505 ProSiteProfiles Myb-like domain profile. 45 97 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3921g00007 Gabi-Chr3921 193726 196444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3921g00007 30 505 MYB Transcription Factor Family AT4G26930 37.090 1.84e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3921g00007 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3921g00007 - - lja:Lj6g3v0869180.1 635.18