Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3920g00043 ATGGGAGAAGAAGCGGCTTGTATGCAAACATTGGAAGATGGAAGGAGGGAAAACAATGAAGAATCAAGGACGGAACTGAAGCGGGACTACCACCCATGCGTTGCTGATACTGAGCCTGACCTGTTCCCGAATAAGAAACAAGCAAAAGAAGTTTCGAACGATGAAGTGCGCTCTGAGGTTTCCAACCCCAACGTTTCTGCAACAGAACATGCGCTAACTTTTCAAGATATCAGTAGCCAACCGACTGAATCCGCGAATGTTAACCAAACAGAGTGTGGAGAACTAACGTCTACTTGTTTGGAGAATTCAAGTTCTGATGAGACCTTGAGTGATGAAGCCGGTGTTCAGAATAATAATAGTAATAATAATAATACTTGTCAGAATGATAAGGACACAAGTAGCGCCGCAATGACGTCCCGTGTTGTGCTTGAAATTCCCAAGCATGCTAGTTCGTCTGGTATCAGAAAGATCACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGGTTATCAACCGCGTGCTCCAAACAACTATGGCTTTCATGGCGATGATGAAGAATATTTGGCAAAGGATGATTGCAATAGTGGGATGTTGGAGAGCTCGTGTGGTTTGTACGCTCGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTCCCCAACTACTACCCTACAAATGTCAAAAAACTGTTATCAACTGGTATCCTTGACGGAGCTATCGTGAAATATATTTACAACCCTGGAAAGGTGGAGCTACCTGGGGTTATTGCTGGCGGCGGATATTTGTGTGGCTGTTCAGTGTGCAATTACTCCAGAGTGCTTAGTGCGTATGAGTTCGAGCAGCATGCTGGTGCCAAGACTAGACATCCAAATAATCATATATTCCTAGAAAATGGAAGACCAATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGCTTACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAACGAAGAGTCCTTCCAGGTTTGGAAAGAAAGTCTTCTACAAAGCAACGGGAGGGCTCAGGCTTATAAAAATTATACCACCAAGGTTATTGGCATACCTCATACAAACATAAGTCAATCTGGAGAAAGTGAGAGTCACTTGTCGTCTTTGCATGTGCCAAGTCATTTTGAGCAGTCAATGTATGTGAAGCAGACAACTGATGAGTGGAAACGTGTGGTGAAGAAGCCAAGCTCCTGCACTTCTAACTCAGGTGTACTGCTGAAGAAAAGTTCTGATGGTTGCACTAAGAGAAGGGACAACGATTTACACAGGTTACTTTTTATGCCAAATGGACTACCAGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAGCAGGGAAATGGTATAGTCTGTGCTTGCTGTGACATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGACGTCAACCTTACCGGCACATATATACCTCCAATGGATTAACACTTCATGATATAGCTCTCTCTTTGGCAAATGGTCAAAACCTTACCACTGGAGATAGTGATGATATGTGTGCAGTGTGTGGAGATGGAGGAGATTTGCTTCTTTGCAATGGATGCCCTAGGGCCTTTCATGCAGCCTGCTTGGGTTTAAATTGTGTTCCAGAAAGTGGTTGGCATTGTCTAAATTGTAGAGATAATGCTGGTAATGGAAGAGAATCTTGTATTGGGAGGCCAATCATGATACGGTTGACTCGGGTTGATAAAGCACCAGAGATTGAAATGGGTGGATGTGTTGTTTGCAGGGAAAATGATTTCAGTGTTGCTAAATTTGATGATCGAACAGTGATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGAACATTGGGCTTTGTGAGTTGGAAGAGCTACCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGAACTTATACCTGCTTGCTTGTCTGAACTAATAATCAGGAAGCATGAGGATAGGGGATTATGTACCTATGGAGGCAAGAATGATATCCGGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAGCATTTACCATTACTTTCACGGGCCGCTGCAATATTTCGAGAGTGTTTTGATCCCATTGTTGCGATATCTGGTCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGTCAAGAATTTGGAGGCATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTAGTATCTGCTGGGCTTCTTAGGATATTTGGCCGTAATATTTCTGAGCTTCCACTGGTAGCTACAAGCAGAGAACATCAAGGAAAAGGTTATTTTCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTATCTTCTCTAAATGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGATGCTGAGTCAATTTGGACTAAGAAATTAGGCTTCCGAAAGATGAGTGAAGATCAGTTATCTAAATGTCTTAGAGAGGTGCAGCTAACCCTCTTCAATAAAACTTCATTGCTGGAGAAGACAGTGCAGCTGGCGACAGAATGA 2610 0.4234 MGEEAACMQTLEDGRRENNEESRTELKRDYHPCVADTEPDLFPNKKQAKEVSNDEVRSEVSNPNVSATEHALTFQDISSQPTESANVNQTECGELTSTCLENSSSDETLSDEAGVQNNNSNNNNTCQNDKDTSSAAMTSRVVLEIPKHASSSGIRKITFKFSKKKEDYGYQPRAPNNYGFHGDDEEYLAKDDCNSGMLESSCGLYARNMELKMSKKVVPNYYPTNVKKLLSTGILDGAIVKYIYNPGKVELPGVIAGGGYLCGCSVCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSLLDEVIKNVAGSSVNEESFQVWKESLLQSNGRAQAYKNYTTKVIGIPHTNISQSGESESHLSSLHVPSHFEQSMYVKQTTDEWKRVVKKPSSCTSNSGVLLKKSSDGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCACCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLLLCNGCPRAFHAACLGLNCVPESGWHCLNCRDNAGNGRESCIGRPIMIRLTRVDKAPEIEMGGCVVCRENDFSVAKFDDRTVIICDQCEKEYHVGCLRNIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGAELIPACLSELIIRKHEDRGLCTYGGKNDIRWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNISELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKCLREVQLTLFNKTSLLEKTVQLATE 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3920g00043 869 ProSiteProfiles Zinc finger PHD-type profile. 522 567 IPR019787 -
Gabi3920g00043 869 MobiDBLite consensus disorder prediction 100 133 - -
Gabi3920g00043 869 MobiDBLite consensus disorder prediction 9 35 - -
Gabi3920g00043 869 MobiDBLite consensus disorder prediction 1 66 - -
Gabi3920g00043 869 SUPERFAMILY FYVE/PHD zinc finger 510 565 IPR011011 -
Gabi3920g00043 869 ProSitePatterns Zinc finger PHD-type signature. 598 653 IPR019786 -
Gabi3920g00043 869 MobiDBLite consensus disorder prediction 42 56 - -
Gabi3920g00043 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 517 573 IPR013083 -
Gabi3920g00043 869 ProSitePatterns Zinc finger PHD-type signature. 525 564 IPR019786 -
Gabi3920g00043 869 CDD PHD1_AIRE 524 564 - -
Gabi3920g00043 869 FunFam PHD zinc finger protein 745 852 - -
Gabi3920g00043 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 656 IPR013083 -
Gabi3920g00043 869 Gene3D - 695 862 - -
Gabi3920g00043 869 ProSiteProfiles Zinc finger PHD-type profile. 595 656 IPR019787 -
Gabi3920g00043 869 SUPERFAMILY FYVE/PHD zinc finger 594 651 IPR011011 -
Gabi3920g00043 869 PANTHER AUTOIMMUNE REGULATOR 6 863 - -
Gabi3920g00043 869 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 512 590 - -
Gabi3920g00043 869 SMART PHD_3 524 565 IPR001965 -
Gabi3920g00043 869 SMART PHD_3 597 654 IPR001965 -
Gabi3920g00043 869 Pfam Tify domain binding domain 253 307 IPR032308 -
Gabi3920g00043 869 Pfam Tify domain binding domain 458 507 IPR032308 -
Gabi3920g00043 869 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 753 839 IPR016181 -
Gabi3920g00043 869 FunFam PHD zinc finger protein 596 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3920g00043 Gabi-Chr3920 557051 566932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3920g00043 1 869 PHD Transcription Factor Family AT3G53680 53.507 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3920g00043 - - gmx:100808999 1534.62