Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3920g00035 ATGGCGGAGTCACGGCGGCTCCGACAGCTGCAATCGGAACAGGCGAACAAGATTTGCGTGGATTGCTCCCAGAAGAACCCGCAGTGGGCGTCGGTGTCCTACGGCGTGTTCATGTGCCTCGAGTGTTCCGGCAAGCACCGTGGCCTCGGCGTCCACATCTCCTTCGTTCGATCGGTGACAATGGATTCCTGGTCCGATATCCAGATCAAGAAGATGGAAGCCGGTGGCAACGACAAGCTCAATGCATTCTTCGCTCAGTACTCTATATCTAAGGAAACAGAAATCGTCACCAAGTACAACACCAACGCCGCCGCCGTCTACCGCGATCGGATCCAGGCCATCGCCGAGGGCCGTCCGTGGCGCGATCCGCCGATTGTGAAGGAGAATCTCGCGGCCTCCGGCATGGGGAAGCCGCCGCGGATGCAGAGTCGCCGGAATAATGACGGAGGTTGGGACGATTGGGATAACGAAGGCGGTTTGGGAAACTCCGGAGATCTCAGGAGCAAGTCGACCGGAGATTTCAGGAGCGTTAATGGTGGCGGTGCGCCGTTGAAGTCGAGGTCGACGGAGGATATGTACACGCGGTCGCAACTGGATGCTTCAGCGGCGAATAAGGAGAGCTTCTTTGCTCGGAAGATGGTGGAGAACGAGTCGCGACCCGAAGGGCTTCCGCCGTCGCAGGGTGGGAAGTACGTTGGGTTCGGATCGAGTCCCGCGCCTTCGCAGAGGAGCAATCCGCAGAAGGATTATGATTATTTCTCTGTCGTTTCTCAGGGGATTGGTAAATTGTCACTGGTTGCTGCATCTGCGGCTCAATCTGCAGCCACTGTTGTTCAAGCAGGCACAAAAGACATCACTTCTAAGGTCAAGGAGGGTGGATATGATCAGAAGGTCAATGAAACTGTCAATGTTGTCTCTCAAAAGACAGCAGAGATTGGAGAAAGGACATGGGGTATAATGAAAGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAGTACACTAGAGATAACCCAAATTGGAACACTGATAACTGGCAACAAAATGAGAATGATAGAAATGGTTACTATCAGGATTTCAATCAAGAGAACAAAGGCTGGAATTCTTCTACCGGGAGAGAAGAATCTTCAGGACAATTTAAAACTCATAGCTCAAGCTCTTGGGATGATTGGGACCACAAAGATAGTAGGAAGGAAGAACCAACTAAAGGATCGGCTTCCCATACTAATGATGGTTGGGCTGGCTGGGATAATGCGAAAGATGATGGATTTGATAATTTTTATGAAGGTGCATCTAACAAGAAAGCTGTTGGTCATAATGGCAGCTCAGATGCCACTTGGTCAGGGGGAGGATTTCTCTAA 1362 0.5147 MAESRRLRQLQSEQANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNDKLNAFFAQYSISKETEIVTKYNTNAAAVYRDRIQAIAEGRPWRDPPIVKENLAASGMGKPPRMQSRRNNDGGWDDWDNEGGLGNSGDLRSKSTGDFRSVNGGGAPLKSRSTEDMYTRSQLDASAANKESFFARKMVENESRPEGLPPSQGGKYVGFGSSPAPSQRSNPQKDYDYFSVVSQGIGKLSLVAASAAQSAATVVQAGTKDITSKVKEGGYDQKVNETVNVVSQKTAEIGERTWGIMKGVMALASQKVEEYTRDNPNWNTDNWQQNENDRNGYYQDFNQENKGWNSSTGREESSGQFKTHSSSSWDDWDHKDSRKEEPTKGSASHTNDGWAGWDNAKDDGFDNFYEGASNKKAVGHNGSSDATWSGGGFL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3920g00035 453 MobiDBLite consensus disorder prediction 336 385 - -
Gabi3920g00035 453 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Gabi3920g00035 453 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Gabi3920g00035 453 SUPERFAMILY ArfGap/RecO-like zinc finger 5 113 IPR037278 -
Gabi3920g00035 453 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Gabi3920g00035 453 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Gabi3920g00035 453 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Gabi3920g00035 453 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Gabi3920g00035 453 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Gabi3920g00035 453 CDD ArfGap_ArfGap1 5 117 - -
Gabi3920g00035 453 MobiDBLite consensus disorder prediction 336 453 - -
Gabi3920g00035 453 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Gabi3920g00035 453 MobiDBLite consensus disorder prediction 215 246 - -
Gabi3920g00035 453 MobiDBLite consensus disorder prediction 130 200 - -
Gabi3920g00035 453 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 452 IPR044519 GO:0005096|GO:0016192
Gabi3920g00035 453 MobiDBLite consensus disorder prediction 386 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3920g00035 Gabi-Chr3920 496373 500531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3920g00035 5 87 C2H2 Transcription Factor Family AT4G21160 47.619 9.00e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3920g00035 K12492 - gmx:100806519 713.375