Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3920g00027 ATGTCCACAAATACAAAGAGAGATTTGGGTTCTAATGAAGAAGAAAGTGAGCTGAGAAGAGGTCCTTGGACTCTAGAAGAAGACAGCCTACTCATACACTATATTGCTCGTCATGGAGAAGGTCGTTGGAATATGTTAGCTAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGTAGACTCAGATGGCTGAATTATTTGAAACCAGACATTAAGAGAGGAAACCTTACTCCACAAGAACAGCTGTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTTCCTGGAAGAACAGACAATGAAATTAAAAACTACTGGAGAACAAGGGTACAGAAACAGGCACGCCAACTTAACATTGAGTCTGGTAGCAAGAGATTCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAACAGGACACTTATCCCAGCTCTTGCTCTTCCATGACAAACATAAATTTTGGGAATTCTGCAGAAGCTTCAAGCAGTTCAACAAAAACCAGCTCCAATATTCCTTCTCTGTCTCCATCATCTCCTCCACAGAGGGAATTTATAGATGCTGCAAATCATTTCAGCACTATGTCAAGTCCTAGCAATCCTTTCTCGGACTCCTTCCAATTTTCACAGTTACTTGAAATTTCAGAACCACCTAAAAGTACTCCCAATGTGTTTGAGAACAATGTTTACAGCTACCCAATCCAGGATAGCTACTATGCTGATACCAATAACTATGGCATGGAAGGTCTAAATCTGGATCCAATGTCAATAATGGAAACTTATGACATTCCACAGTTCGATTTTCAGACTGCGGGGAGTGGCTGGATGTTGGACAACATGGGTGATACTTTATGGAACATGGATGCTATGTGA 909 0.4114 MSTNTKRDLGSNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQDTYPSSCSSMTNINFGNSAEASSSSTKTSSNIPSLSPSSPPQREFIDAANHFSTMSSPSNPFSDSFQFSQLLEISEPPKSTPNVFENNVYSYPIQDSYYADTNNYGMEGLNLDPMSIMETYDIPQFDFQTAGSGWMLDNMGDTLWNMDAM 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3920g00027 302 FunFam Myb transcription factor 20 72 - -
Gabi3920g00027 302 Gene3D - 17 73 - -
Gabi3920g00027 302 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3920g00027 302 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 190 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi3920g00027 302 SMART sant 19 69 IPR001005 -
Gabi3920g00027 302 SMART sant 72 120 IPR001005 -
Gabi3920g00027 302 CDD SANT 77 116 IPR001005 -
Gabi3920g00027 302 Gene3D - 76 118 - -
Gabi3920g00027 302 MobiDBLite consensus disorder prediction 170 195 - -
Gabi3920g00027 302 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Gabi3920g00027 302 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Gabi3920g00027 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Gabi3920g00027 302 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Gabi3920g00027 302 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Gabi3920g00027 302 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Gabi3920g00027 302 CDD SANT 22 67 IPR001005 -
Gabi3920g00027 302 FunFam MYB transcription factor 77 140 - -
Gabi3920g00027 302 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Gabi3920g00027 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3920g00027 Gabi-Chr3920 380901 382000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3920g00027 15 154 MYB Transcription Factor Family AT1G68320 82.857 2.73e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3920g00027 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3920g00027 K09422 - gmx:100780759 504.597