Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3920g00014 ATGTTTCAGAAATTGCAACAAGATTTGCATGCCAGTCAAGGTTCTCATCCATTTGATGGAGTTAACAGTCTAACTGTAGATAATCTCTCACCTCCAAGTTTGCACAACTACATACTTATTAGACTCAGAGCTAAAGGAGATGAATATCACGTGTTTAGGGAAGATGCTAAGCAAGAATGGGATTCAGTGAAATCTTATTATCAGAAAGCTGCAACAACATATACCAAAGGAGATCGAGCATATGCTGCCTTTCTTTCTGACCAGTCATTTCCCGAAAGCAGGGTGCAGACAACAGTCACAGGACTACTGAAACTTAATAAAAGCTACCTCTCAACCCAGTCCTTGTGGAGACCAGAAGGAAACCCATTAGACCTTAACAACTTACCTGATGAGTACTCTAGAGATGGAAAACAAGTCCTCGAAGACAGCTCCTCACCCGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACAGAGACGCTGAACCATGCTCGTCAGTTGGTCTTCCGTAATGATCATAACCTTGCTGCACAAGGTGCCACTCACTTAGGATGCTGCCAACCAATAGCAACAGGGGGTTATCATCCATCAGGTAACATGGGAGACCCAACAGCACCTCTGAGATTCCCAAGATACTTCTCTGGTTCATCCTCAACCCACATACCACCGCCACCGCCACCGCCTCCACAACCATATTTATACGCTTCTCCTTCAAGGCCAGTGTCTTTTCCCTCACACTTCACTCAGCATCCATCGGTGAACGATTACTGTGTGGGTCATGTCCTGAGTGGCCACCCCAACATTAACTATGTGGCGGGTGCAGCAGCAGCATCAGAGTCAAGTTACACCTGCATTGGTGCACCGGTGGGACAAGGGTTCGGAGGTGGTGTTGGTGTTGGTGTTGGTGTTGGTGGGCGAGGCTTGGATGGTGGTAAGGACGGGTCACTGCAGAATCAGGAAGAAGGATTGAATTGGGGAAGGAGCTATTCAGGAGCACAGCACCGTTTGGATCCTCATTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 1158 0.4793 MFQKLQQDLHASQGSHPFDGVNSLTVDNLSPPSLHNYILIRLRAKGDEYHVFREDAKQEWDSVKSYYQKAATTYTKGDRAYAAFLSDQSFPESRVQTTVTGLLKLNKSYLSTQSLWRPEGNPLDLNNLPDEYSRDGKQVLEDSSSPGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNLAAQGATHLGCCQPIATGGYHPSGNMGDPTAPLRFPRYFSGSSSTHIPPPPPPPPQPYLYASPSRPVSFPSHFTQHPSVNDYCVGHVLSGHPNINYVAGAAAASESSYTCIGAPVGQGFGGGVGVGVGVGGRGLDGGKDGSLQNQEEGLNWGRSYSGAQHRLDPHSAINRFQDGF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3920g00014 385 FunFam Zinc finger protein STAMENLESS 1 141 214 - -
Gabi3920g00014 385 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Gabi3920g00014 385 MobiDBLite consensus disorder prediction 131 160 - -
Gabi3920g00014 385 Gene3D Classic Zinc Finger 143 218 - -
Gabi3920g00014 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Gabi3920g00014 385 PANTHER ZINC FINGER PROTEIN JAGGED 135 330 IPR045320 GO:0003700
Gabi3920g00014 385 MobiDBLite consensus disorder prediction 233 268 - -
Gabi3920g00014 385 Pfam Domain of unknown function (DUF1771) 49 88 IPR013899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3920g00014 Gabi-Chr3920 244501 261188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3920g00014 119 328 C2H2 Transcription Factor Family AT1G13400 46.729 3.43e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3920g00014 DUF1771 3e-07 No_clan