Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3920g00008 ATGACTCCAGCTAATACGAACGAAGCAAACGCCGTTGGTGGCAAAACCGCAAGAGCCTGTGATAGCTGCATAACAAAGCGAGCTCGCTGGTACTGTGCTGCCGACGATGCTTTCCTATGCCAAGCTTGTGACTCTTCCGTTCACTCAGCTAACTCATTGGCTCGTAGACATGAAAGAGTCCGCTTGAATACGGCGTCGTACAAGTCCACTTCCGCAGCTTCTGATGAACTCAATAATTGTGCTCCATCGTGGCACCATGGCTTCACCAAGAAAGCTCGAACACCAAGACATGGGAAACACTCAGCAACTCGTCAGACACCTAAGTCATGGAGTAACGAGCCAGCGAGAAACAACCCTTTTCACCTGGTCCCTGAAGTGGGTTTGGATGAAGTGAATTCACACGAAGAGAACGAGGAGCAGCTTCTTTATAGGGTCCCTATATTCGATCCCTTTGTAGTTGAACTGTGCAGTACTCCTTCTTCTGTGACTTCAGCTGAAGGAGCTATAGCTGTGGCTGCTGCTCCTCCTCCTGAGGTTGAAAACATGGTCACCGAAGGGAGCGAGAGCAAAGTTCCGTTGGCTTATAATAATCATAGCTTGGAAGGGTTTCTTCCTTCTGATATTGAACTTGCTGAGTTTGCAGCTGACGTGGAGAGCTTATTGGGTAAGGGACTAGAAAACGAGTGCATAGGGATGGAAGAGCTGGGGCTTGTTGATACCAAAAAAGAGGAGTGGTGGGATTGTTCTGCTGTGGGGAGTGGGAAGGTGAAGGTTGAAGAGGAAGAGAGTGCTGCTAAGCTTGAGGCAGATGAACAGATGGAGATGGGAAGAGGATCGTTTGAGTTGAGCTTTGATTATGATTCTCATGAAACATGTGAAGAGGTGAAGGAGAAGGTTGATTCGGATATGGGGAATGGTGGAGAACACAAGGAGAGAAAAAGGAAGATATCTTTGCAGCTAGATTATGAGGCTGTAATCATCGCATGGGCTAGCCAAAAGTCTCCTTGGACTACCGGTGATAAACCAAACTTGGACCCTGATGAGTGCTGGCCTGACTGCATGGGAACTTGTGGAACGGAGCTTCATCATCCTTATGGTGAATTGGGGAGATTTGGGTGTCATCCAATAATGACAGACGGGGGCAGAGAGGCAAGGGTGTCAAGGTACCGAGAAAAGCGCCGAACAAGGTTGTTCTCTAAGAAAATAAGGTACGAGGTTAGGAAATTGAACGCAGAGAAGAGACCTAGAATGAAAGGGAGGTTTGTTAAGAGGGCTTCCTTTGCAGCACCTACATTTCCTTTGCAAAACAAATGA 1314 0.4764 MTPANTNEANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLNTASYKSTSAASDELNNCAPSWHHGFTKKARTPRHGKHSATRQTPKSWSNEPARNNPFHLVPEVGLDEVNSHEENEEQLLYRVPIFDPFVVELCSTPSSVTSAEGAIAVAAAPPPEVENMVTEGSESKVPLAYNNHSLEGFLPSDIELAEFAADVESLLGKGLENECIGMEELGLVDTKKEEWWDCSAVGSGKVKVEEEESAAKLEADEQMEMGRGSFELSFDYDSHETCEEVKEKVDSDMGNGGEHKERKRKISLQLDYEAVIIAWASQKSPWTTGDKPNLDPDECWPDCMGTCGTELHHPYGELGRFGCHPIMTDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPLQNK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3920g00008 437 SMART bboxneu5 15 62 IPR000315 GO:0008270
Gabi3920g00008 437 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 426 - -
Gabi3920g00008 437 CDD Bbox1_BBX-like 19 62 - -
Gabi3920g00008 437 MobiDBLite consensus disorder prediction 89 103 - -
Gabi3920g00008 437 Pfam CCT motif 382 424 IPR010402 GO:0005515
Gabi3920g00008 437 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Gabi3920g00008 437 ProSiteProfiles CCT domain profile. 382 424 IPR010402 GO:0005515
Gabi3920g00008 437 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Gabi3920g00008 437 MobiDBLite consensus disorder prediction 89 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3920g00008 Gabi-Chr3920 150788 152894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3920g00008 9 424 C2C2-CO-like Transcription Factor Family AT1G25440 46.868 2.24e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi3920g00008 zf-B_box 9.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3920g00008 - - gmx:100782921 546.199