Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3920g00006 ATGCCTGAGTCTCGGAAACAACTAGCGAAAAGACCAAAGCAAAGGTCTAACCCCTTGCAAGAGTCCAAGATGACGAGAAAACTGCGAATCATGTATGACGACCCCGATGCTACTGATTCATCGGAAGATGAGTCAGAGGTCATTGTGAACCCGAGAAAGATAAAACGAAGCATCCTTGAGATTTCACTTCCCCTTGTTGTTTCTGCCATTCCTGTCTCTGCTGAAACAAGCTCGTGTGCTGAGAATAACCACAGTGAGGCGTTGAAGACTTGCATTGAAGGTCAACCTCAAAACAAGAAGAGGGTTTCAACCCAAACCCCATCAACGAGGAGGCAATCATCTGGCAAATACAGAGGTGTTCGGCAGAGGAAATGGGGAAAGTGGGCTGCTGAGATTCGTGATCCGTTTAAGAGTGCCCGTATCTGGTTAGGCACTTACAACACTGCGGAAGAGGCTTCCCGAGCCTACGAGGCTAAACGGCTCGAATTTGAAGCTATTGCTAAGGCTCAATCCCACAATAATGGTTCTTCTTCTTCTGCTGCACCTTTGGCTACAACTTCTGATAAGAGTAAGAGTAACTACTGTAACTCTTCTGCTGCTGCTGCTGCTGCTTCGACTTCTGCTGTATCTGTGTCAGAGAAGTTTTCTACTACTTCGGAGGACTCGGAGAGCGTGTTATCACACACATCACCATCCTCCGTGCTTGAGTTGGATACCTTGGCTTCCAATTTGATTGAGAAGGGCAATATTGCAATCGATGAAGCTGTTGAGGCCAATGATTTGGTGGCTGAACTTGCGGGTTTGGAAATACCGGATTTGAGTCTGTTGAAAGTGCCTCCACCATCTGCTGCTACTGCTGCTCCATCTGGATCTGAGCCCAACCTTGGGTTTGATTTTGATTGGTTAAACTTTGATGATTATGGGCAGGGTTTTGATGATCTTGGTGGCTTAGAGGATATCCAAATTTGTGGGTTTGAAGACAGTGAGCCTAGTAAGCTTCCTGATTTCGATTTTGGTGATTTTGGTGCTGATGAGTTTGCTGGTTGGACTGAGGAACCCCTCAATATACCTTGCGCCTAA 1080 0.4648 MPESRKQLAKRPKQRSNPLQESKMTRKLRIMYDDPDATDSSEDESEVIVNPRKIKRSILEISLPLVVSAIPVSAETSSCAENNHSEALKTCIEGQPQNKKRVSTQTPSTRRQSSGKYRGVRQRKWGKWAAEIRDPFKSARIWLGTYNTAEEASRAYEAKRLEFEAIAKAQSHNNGSSSSAAPLATTSDKSKSNYCNSSAAAAAASTSAVSVSEKFSTTSEDSESVLSHTSPSSVLELDTLASNLIEKGNIAIDEAVEANDLVAELAGLEIPDLSLLKVPPPSAATAAPSGSEPNLGFDFDWLNFDDYGQGFDDLGGLEDIQICGFEDSEPSKLPDFDFGDFGADEFAGWTEEPLNIPCA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3920g00006 359 Gene3D AP2/ERF domain 115 171 IPR036955 GO:0003700|GO:0006355
Gabi3920g00006 359 MobiDBLite consensus disorder prediction 170 189 - -
Gabi3920g00006 359 CDD AP2 116 163 IPR001471 GO:0003700|GO:0006355
Gabi3920g00006 359 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 238 - -
Gabi3920g00006 359 SMART rav1_2 116 170 IPR001471 GO:0003700|GO:0006355
Gabi3920g00006 359 SUPERFAMILY DNA-binding domain 116 163 IPR016177 GO:0003677
Gabi3920g00006 359 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3920g00006 359 ProSiteProfiles AP2/ERF domain profile. 116 176 IPR001471 GO:0003700|GO:0006355
Gabi3920g00006 359 Pfam AP2 domain 116 164 IPR001471 GO:0003700|GO:0006355
Gabi3920g00006 359 MobiDBLite consensus disorder prediction 1 36 - -
Gabi3920g00006 359 MobiDBLite consensus disorder prediction 93 115 - -
Gabi3920g00006 359 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Gabi3920g00006 359 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Gabi3920g00006 359 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3920g00006 Gabi-Chr3920 105522 106940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3920g00006 6 358 AP2-EREBP Transcription Factor Family AT1G68550 34.903 1.12e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3920g00006 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3920g00006 - - gmx:102660769 451.825